Metatranscriptomic insights on gene expression and regulatory controls in Candidatus Accumulibacter phosphatis

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Expanding our view of genomic diversity inCandidatus Accumulibacter clades

(2014) Connor T. Skennerton et al.   ENVIRONMENTAL MICROBIOLOGY

Genome Reconstruction and Gene Expression of “Candidatus Accumulibacter phosphatis” Clade IB Performing Biological Phosphorus Removal

(2014) Yanping Mao et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Bacterial collagen-like proteins that form triple-helical structures

(2014) Zhuoxin Yu et al.   JOURNAL OF STRUCTURAL BIOLOGY

Global Analysis of Photosynthesis Transcriptional Regulatory Networks

(2014) Saheed Imam et al.   PLoS Genetics

Crystal structure of (R)-3-hydroxybutyryl-CoA dehydrogenase PhaB from Ralstonia eutropha

(2013) Jieun Kim et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Comparative genomics of two ‘Candidatus Accumulibacter’ clades performing biological phosphorus removal

(2013) Jason J Flowers et al.   ISME Journal

CandidatusAccumulibacter phosphatis: Elusive Bacterium Responsible for Enhanced Biological Phosphorus Removal

(2013) Dae-Wook Kang et al.   JOURNAL OF ENVIRONMENTAL ENGINEERING

Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification

(2013) Housheng Hansen He et al.   NATURE METHODS

Engineering a Cyanobacterial Cell Factory for Production of Lactic Acid

(2012) S. Andreas Angermayr et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

The group A streptococcal collagen-like protein-1, Scl1, mediates biofilm formation by targeting the extra domain A-containing variant of cellular fibronectin expressed in wounded tissue

(2012) Heaven Oliver-Kozup et al.   MOLECULAR MICROBIOLOGY

Cost-Benefit Tradeoffs in Engineered lac Operons

(2012) M. Eames et al.   SCIENCE

The streptococcal collagen-like protein-1 (Scl1) is a significant determinant for biofilm formation by group A Streptococcus

(2011) Heaven A Oliver-Kozup et al.   BMC MICROBIOLOGY

Microbial communities involved in enhanced biological phosphorus removal from wastewater—a model system in environmental biotechnology

(2011) Per Halkjær Nielsen et al.   CURRENT OPINION IN BIOTECHNOLOGY

Engineering Cyanobacteria To Synthesize and Export Hydrophilic Products

(2010) H. Niederholtmeyer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metatranscriptomic array analysis of ‘Candidatus Accumulibacter phosphatis’-enriched enhanced biological phosphorus removal sludge

(2010) Shaomei He et al.   ENVIRONMENTAL MICROBIOLOGY

‘Candidatus Accumulibacter’ gene expression in response to dynamic EBPR conditions

(2010) Shaomei He et al.   ISME Journal

Incorporating microbial ecology into the metabolic modelling of polyphosphate accumulating organisms and glycogen accumulating organisms

(2010) A. Oehmen et al.   WATER RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Radiolabelled proteomics to determine differential functioning ofAccumulibacterduring the anaerobic and aerobic phases of a bioreactor operating for enhanced biological phosphorus removal

(2009) Margaret Wexler et al.   ENVIRONMENTAL MICROBIOLOGY

Polyhydroxyalkanoate Granules Are Complex Subcellular Organelles (Carbonosomes)

(2009) D. Jendrossek   JOURNAL OF BACTERIOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Denitrification capabilities of two biological phosphorus removal sludges dominated by different ‘CandidatusAccumulibacter’ clades

(2009) Jason J. Flowers et al.   Environmental Microbiology Reports

The Cost of Expression of Escherichia coli lac Operon Proteins Is in the Process, Not in the Products

(2008) D. M. Stoebel et al.   GENETICS

Principles of transcriptional regulation and evolution of the metabolic system in E. coli

(2008) A. S.N. Seshasayee et al.   GENOME RESEARCH

Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal

(2008) Paul Wilmes et al.   ISME Journal

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Metaproteomics Provides Functional Insight into Activated Sludge Wastewater Treatment

(2008) Paul Wilmes et al.   PLoS One

Involvement of the TCA cycle in the anaerobic metabolism of polyphosphate accumulating organisms (PAOs)

(2008) Yan Zhou et al.   WATER RESEARCH