4.6 Article

On the Enigma of Glutathione-Dependent Styrene Degradation in Gordonia rubripertincta CWB2

期刊

出版社

AMER SOC MICROBIOLOGY
DOI: 10.1128/AEM.00154-18

关键词

genomic island; glutathione S-transferase; glutathione in actinobacteria; horizontal gene transfer; hybrid gene cluster; microbial ibuprofen production; proteomics; styrene monooxygenase; transcriptomics; xenobiotic compounds

资金

  1. Deutsche Bundesstiftung Umwelt (DBU)
  2. European Social Fund
  3. Saxonian Government [GETGEOWEB 100101363]

向作者/读者索取更多资源

Among bacteria, only a single styrene-specific degradation pathway has been reported so far. It comprises the activity of styrene monooxygenase, styrene oxide isomerase, and phenylacetaldehyde dehydrogenase, yielding phenylacetic acid as the central metabolite. The alternative route comprises ring-hydroxylating enzymes and yields vinyl catechol as central metabolite, which undergoes meta-cleavage. This was reported to be unspecific and also allows the degradation of benzene derivatives. However, some bacteria had been described to degrade styrene but do not employ one of those routes or only parts of them. Here, we describe a novel hybrid degradation pathway for styrene located on a plasmid of foreign origin. As putatively also unspecific, it allows metabolizing chemically analogous compounds (e.g., halogenated and/or alkylated styrene derivatives). Gordonia rubripertincta CWB2 was isolated with styrene as the sole source of carbon and energy. It employs an assembled route of the styrene side-chain degradation and isoprene degradation pathways that also funnels into phenylacetic acid as the central metabolite. Metabolites, enzyme activity, genome, transcriptome, and proteome data reinforce this observation and allow us to understand this biotechnologically relevant pathway, which can be used for the production of ibuprofen. IMPORTANCE The degradation of xenobiotics by bacteria is not only important for bioremediation but also because the involved enzymes are potential catalysts in biotechnological applications. This study reveals a novel degradation pathway for the hazardous organic compound styrene in Gordonia rubripertincta CWB2. This study provides an impressive illustration of horizontal gene transfer, which enables novel metabolic capabilities. This study presents glutathione-dependent styrene metabolization in an (actino-) bacterium. Further, the genomic background of the ability of strain CWB2 to produce ibuprofen is demonstrated.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.6
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Biochemistry & Molecular Biology

Improving Biocatalytic Properties of an Azoreductase via the N-Terminal Fusion of Formate Dehydrogenase

Anna Christina R. Ngo, Fabian Peter Josef Schultes, Artur Maier, Simon Niklas Hermann Hadewig, Dirk Tischler

Summary: This study investigated the fusion of azoreductase (AzoRo) and formate dehydrogenase (FDH) for efficient reduction of azo dyes. The position of AzoRo in the fusion protein affects enzyme activities, with a 20-fold decrease when it is in the N-terminus. The FDHC23S+AzoRo construct showed the highest activity and improved substrate scope for bulkier dyes. Additionally, pH influenced the stability and activity of the fusion protein, with a suboptimal pH leading to reduced dye reduction.

CHEMBIOCHEM (2022)

Article Chemistry, Medicinal

Bioassay-Guided Fractionation Leads to the Detection of Cholic Acid Generated by the Rare Thalassomonas sp.

Fazlin Pheiffer, Yannik K. -H. Schneider, Espen Holst Hansen, Jeanette Hammer Andersen, Johan Isaksson, Tobias Busche, Christian Rueckert, Joern Kalinowski, Leonardo van Zyl, Marla Trindade

Summary: This study investigates the bioactive potential of the marine invertebrate symbiont Thalassomonas actiniarum, identifying its antibacterial and cytotoxic activities, as well as their ability to produce cholic acid and 3-oxo cholic acid through hydrolysis of conjugated bile acids. The findings provide a foundation for further research on the bioactivities and ecological role of Thalassomonas sp. in the marine environment.

MARINE DRUGS (2023)

Article Chemistry, Multidisciplinary

Structural and Mechanistic Studies on Substrate and Stereoselectivity of the Indole Monooxygenase VpIndA1: New Avenues for Biocatalytic Epoxidations and Sulfoxidations

Julia Kratky, Daniel Eggerichs, Thomas Heine, Sarah Hofmann, Philipp Sowa, Renato H. Weisse, Dirk Tischler, Norbert Straeter

Summary: This study presents the crystal structure of VpIndA1, an indole monooxygenase from bacterium Variovorax paradoxus EPS, and reveals the structural basis of substrate binding and stereoselectivity through substrate complex structures and force-field calculations. By redesigning the substrate cavity based on the structural information, variants with new substrate selectivity and greatly enhanced stereoselectivity were successfully generated. This research opens up new possibilities for structure-based design of these powerful biocatalysts.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2023)

Article Multidisciplinary Sciences

A cryptic oxidoreductase safeguards oxidative protein folding in Corynebacterium diphtheriae

Melissa E. Reardon-Robinson, Minh Tan Nguyen, Belkys C. Sanchez, Jerzy Osipiuk, Christian Ruckert, Chungyu Chang, Bo Chen, Rahul Nagvekar, Andrzej Joachimiak, Andreas Tauch, Asis Das, Hung Ton-That

Summary: In many gram-positive Actinobacteria, MdbA plays a crucial role in bacterial viability by catalyzing oxidative folding of exported proteins. However, in Corynebacterium diphtheriae, the deletion of mdbA only affects cell growth at 37°C, suggesting the existence of alternative oxidoreductase enzymes. Through genetic suppressor mutations, we discovered that elevated expression of tsdA can compensate for the loss of mdbA by mediating oxidative folding of pilin and toxin substrates.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2023)

Article Plant Sciences

Characterization of histone acetyltransferases and deacetylases and their roles in response to dehydration stress in Pyropia yezoensis (Rhodophyta)

Zehao Zhang, Huijuan Qian, Zhongshi Wang, Ying Pang, Xiaowei Guan, Ansgar Poetsch, Dongmei Wang

Summary: Histone acetylation is an important epigenetic mechanism that plays a role in the regulation of various genes controlling growth, development, and response to environmental stresses in eukaryotes. However, the association of histone acetylation with dehydration stress and the genes involved in histone acetylation and deacetylation in red algae remain largely unknown. In this study, in silico analysis identified several histone acetyltransferase (HAT) and histone deacetylase (HDAC) genes in the red seaweed Pyropia yezoensis. The expression of these genes was found to be upregulated during dehydration, suggesting their potential roles in modulating gene expression under stress conditions. Experimental inhibition of HAT and HDAC activities confirmed their involvement in dehydration adaptation. This study provides insights into the regulation and function of HAT/HDAC during stress adaptation in red algae.

FRONTIERS IN PLANT SCIENCE (2023)

Article Chemistry, Physical

Primary alcohols as substrates or products in whole-cell biocatalysis: Toxicity for Escherichia coli expression strains

Fabian Peter Josef Schultes, Melody Haarmann, Dirk Tischler, Carolin Muegge

Summary: Whole-cell biotransformations are a preferred method for complex reactions involving multi-enzyme systems or costly cofactors. However, the toxicity of alcohols, which can serve as reagents, intermediates, or products, poses a challenge for microbial cells. This study investigates the tolerance of different expression strains to alcohols with varying chain lengths, providing important insights for whole-cell biotransformations.

MOLECULAR CATALYSIS (2023)

Article Microbiology

Comparative Assessment of Two Commercial Real-Time PCR Assays for the Diagnosis of Trypanosoma cruzi DNA in Serum

Simone Kann, Gustavo Concha, Felix Weinreich, Andreas Hahn, Christian Rueckert, Joern Kalinowski, Olfert Landt, Hagen Frickmann

Summary: This study compared the performance of two commercial real-time PCR assays for identifying Trypanosoma cruzi DNA in serum. The results showed that both assays had a similar diagnostic accuracy for detecting T. cruzi from human serum, with slightly higher specificity observed for the TibMolBiol assay. The RealStar assay exhibited cross-reactions with T. rangeli, a non-pathogenic parasite, which may be a disadvantage in areas where T. cruzi and T. rangeli co-circulate.

MICROORGANISMS (2023)

Article Plant Sciences

ChIP-Based Nuclear DNA Isolation for Genome Sequencing in Pyropia to Remove Cytosol and Bacterial DNA Contamination

Zehao Zhang, Junhao Wang, Xiaoqian Zhang, Xiaowei Guan, Tian Gao, Yunxiang Mao, Ansgar Poetsch, Dongmei Wang

Summary: This study successfully isolated nuclear DNA using the Chromatin Immunoprecipitation (ChIP) method and analyzed it through high-throughput sequencing. The results showed that this method can effectively reduce interference from cytosolic DNA and bacterial DNA, providing high-quality reference data for genome assembly.

PLANTS-BASEL (2023)

Article Microbiology

Complete Genome Sequence of the Carboxydotrophic Knallgas Bacterium Pseudomonas carboxydohydrogena Strain DSM 1083

Daniel Siebert, Tobias Busche, Ezgi Saydam, Jorn Kalinowski, Christian Rueckert-Reed, Bastian Blombach

Summary: Pseudomonas carboxydohydrogena is a lithoautotrophic and obligate aerobic alphaproteobacterium that can utilize CO, CO2, H-2, and mixtures thereof as sole carbon and energy sources. The complete genome sequence of type strain DSM 1083 is reported, and its close relation to Afipia carboxidovorans strain OM5 is discussed.

MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2023)

Review Biochemistry & Molecular Biology

Proteomic Research of Extracellular Vesicles in Clinical Biofluid

Shipan Fan, Ansgar Poetsch

Summary: Extracellular vesicles (EVs) are lipid bilayer membranous structures produced and released from various cells, and their versatility has been investigated in different pathologies. Proteomics technologies have revolutionized EV studies by enabling high-throughput analysis of their biomolecules for comprehensive identification and quantification. Extensive research has highlighted variations in EV cargo depending on various factors, sparking activities to utilize EVs for diagnosis and treatment.

PROTEOMES (2023)

Meeting Abstract Oncology

T-cell receptor clonality analyses using nanopore sequencing for cutaneous T-cell lymphoma

Cassandra Cieslak, Christian Rueckert, Tobias Busche, Carsten Hain, Joern Kalinowski, Katrin Schaper-Gerhardt, Ralf Gutzmer, Rudolf Stadler

EUROPEAN JOURNAL OF CANCER (2023)

Article Biotechnology & Applied Microbiology

Systems biology of industrial oxytetracycline production in Streptomyces rimosus: the secrets of a mutagenized hyperproducer

Selma Beganovic, Christian Rueckert-Reed, Hilda Sucipto, Wei Shu, Lars Glaeser, Thomas Patschkowski, Ben Struck, Joern Kalinowski, Andriy Luzhetskyy, Christoph Wittmann

Summary: In this study, a multiomics analysis of Streptomyces rimosus was performed to gain insights into the metabolic and regulatory networks driving oxytetracycline formation. The study compared wild-type and hyperproducing strains and revealed key traits influencing oxytetracycline production. Using these traits, the researchers successfully synthesized bhimamycin and created a novel microbial chassis strain with enhanced production. The mutagenized hyperproducer strain exhibited complex mutations, impacting gene expression and complicating rational engineering. This study highlights the importance of precursor supply and genetic stability in improving antibiotic production.

MICROBIAL CELL FACTORIES (2023)

Article Chemistry, Physical

Large scale production of vanillin using an eugenol oxidase from Nocardioides sp. YR527

Daniel Eggerichs, Kathrin Zilske, Dirk Tischler

Summary: Bacterial eugenol oxidases (EUGOs) have been identified as versatile biocatalysts that can transform lignin degradation products into valuable platform chemicals. In this study, we characterized a new member of the EUGO enzyme family, NspEUGO, and compared its biocatalytic potential with EUGO from Rhodococcus jostii RHA1. NspEUGO showed highest activity on vanillyl alcohol derivatives and exhibited the strongest affinity for eugenol. Immobilization of the enzyme on 14 carrier materials allowed for successful production of vanillin in a packed bed reactor.

MOLECULAR CATALYSIS (2023)

Article Infectious Diseases

Characterization of the Antibacterial Activity of Quinone-Based Compounds Originating from the Alnumycin Biosynthetic Gene Cluster of a Streptomyces Isolate

Leonie Sagurna, Sascha Heinrich, Lara-Sophie Kaufmann, Christian Rueckert-Reed, Tobias Busche, Alexander Wolf, Jan Eickhoff, Bert Klebl, Joern Kalinowski, Julia E. Bandow

Summary: Bacteria of the genus Streptomyces produce various specialized metabolites. Single biosynthetic gene clusters (BGCs) can give rise to different products with varying biological activities. In this study, alnumycin and 1,6-dihydro 8-propylanthraquinone were isolated from a Streptomyces strain containing the alnumycin BGC. Both compounds exhibited antimicrobial activity, with 1,6-dihydro 8-propylanthraquinone showing higher activity against E. coli & UDelta;tolC compared to alnumycin. The modes of action of these compounds are worth further investigation.

ANTIBIOTICS-BASEL (2023)

Article Biotechnology & Applied Microbiology

Metabolic engineering of Corynebacterium glutamicum for fatty alcohol production from glucose and wheat straw hydrolysate

Felix Werner, Lynn S. Schwardmann, Daniel Siebert, Christian Ruckert-Reed, Joern Kalinowski, Marie-Theres Wirth, Katharina Hofer, Ralf Takors, Volker F. Wendisch, Bastian Blombach

Summary: This study achieved efficient fatty alcohol production in C. glutamicum from wheat straw hydrolysate for the first time through targeted metabolic engineering and adaptive laboratory evolution (ALE). The study provides useful metabolic engineering principles to tailor C. glutamicum for other products from second-generation feedstock.

BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS (2023)

暂无数据