Human-Associated Lachnospiraceae Genetic Markers Improve Detection of Fecal Pollution Sources in Urban Waters

Animal Feces Contribute to Domestic Fecal Contamination: Evidence from E. coli Measured in Water, Hands, Food, Flies, and Soil in Bangladesh

(2017) Ayse Ercumen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Combined sewer overflow events and childhood emergency department visits: A case-crossover study

(2017) Cole Brokamp et al.   SCIENCE OF THE TOTAL ENVIRONMENT

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Quantification of human-associated fecal indicators reveal sewage from urban watersheds as a source of pollution to Lake Michigan

(2016) Hayley A. Templar et al.   WATER RESEARCH

Current Status of Marker Genes of Bacteroides and Related Taxa for Identifying Sewage Pollution in Environmental Waters

(2016) Warish Ahmed et al.   Water

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Interpreting Prevotella and Bacteroides as biomarkers of diet and lifestyle

(2016) Anastassia Gorvitovskaia et al.   Microbiome

Comparison of Sewage and Animal Fecal Microbiomes by Using Oligotyping Reveals Potential Human Fecal Indicators in Multiple Taxonomic Groups

(2015) Jenny C. Fisher et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sewage Reflects the Microbiomes of Human Populations

(2015) Ryan J. Newton et al.   mBio

Next-generation sequencing (NGS) for assessment of microbial water quality: current progress, challenges, and future opportunities

(2015) BoonFei Tan et al.   Frontiers in Microbiology

Improved HF183 Quantitative Real-Time PCR Assay for Characterization of Human Fecal Pollution in Ambient Surface Water Samples

(2014) Hyatt C. Green et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

VAMPS: a website for visualization and analysis of microbial population structures

(2014) Susan M Huse et al.   BMC BIOINFORMATICS

Human Genetics Shape the Gut Microbiome

(2014) Julia K. Goodrich et al.   CELL

A single genus in the gut microbiome reflects host preference and specificity

(2014) A Murat Eren et al.   ISME Journal

Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys

(2014) Michael C. Nelson et al.   PLoS One

Discovering new indicators of fecal pollution

(2014) Sandra L. McLellan et al.   TRENDS IN MICROBIOLOGY

BlautiaandPrevotellasequences distinguish human and animal fecal pollution in Brazil surface waters

(2014) Amber M. Koskey et al.   Environmental Microbiology Reports

Sewage reflects the distribution of human faecalLachnospiraceae

(2013) Sandra L. McLellan et al.   ENVIRONMENTAL MICROBIOLOGY

Performance of human fecal anaerobe-associated PCR-based assays in a multi-laboratory method evaluation study

(2013) Blythe A. Layton et al.   WATER RESEARCH

Community Structures of Fecal Bacteria in Cattle from Different Animal Feeding Operations

(2011) Orin C. Shanks et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of the Host Specificities of Two Bacteroidales Quantitative PCR Assays Used for Tracking Human Fecal Contamination

(2011) Laurie C. Van De Werfhorst et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Lachnospiraceae and Bacteroidales Alternative Fecal Indicators Reveal Chronic Human Sewage Contamination in an Urban Harbor

(2011) Ryan J. Newton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of Defluviitalea saccharophila gen. nov., sp. nov., a thermophilic bacterium isolated from an upflow anaerobic filter treating abattoir wastewaters, and proposal of Defluviitaleaceae fam. nov.

(2011) L. Jabari et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Detection of the human specific Bacteroides genetic marker provides evidence of widespread sewage contamination of stormwater in the urban environment

(2011) Elizabeth P. Sauer et al.   WATER RESEARCH

Animal-to-Animal Variation in Fecal Microbial Diversity among Beef Cattle

(2010) L. M. Durso et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quantitative PCR assay of sewage-associated Bacteroides markers to assess sewage pollution in an urban lake in Dhaka, Bangladesh

(2010) Warish Ahmed et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Performance of PCR-Based Assays TargetingBacteroidalesGenetic Markers of Human Fecal Pollution in Sewage and Fecal Samples

(2010) Orin C. Shanks et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Evaluation of genetic markers from the 16S rRNA gene V2 region for use in quantitative detection of selected Bacteroidales species and human fecal waste by qPCR

(2010) Richard A. Haugland et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Traditional and molecular analyses for fecal indicator bacteria in non-point source subtropical recreational marine waters

(2010) Christopher D. Sinigalliano et al.   WATER RESEARCH

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Diversity and population structure of sewage-derived microorganisms in wastewater treatment plant influent

(2009) S. L. McLellan et al.   ENVIRONMENTAL MICROBIOLOGY

Evaluation of host-specific Bacteroidales 16S rRNA gene markers as a complementary tool for detecting fecal pollution in a prairie watershed

(2009) B. Fremaux et al.   WATER RESEARCH

Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing

(2008) Susan M. Huse et al.   PLoS Genetics