Stable Isotope Probing for Microbial Iron Reduction in Chocolate Pots Hot Spring, Yellowstone National Park

The Martian subsurface as a potential window into the origin of life

(2017) Joseph R. Michalski et al.   Nature Geoscience

Microbial Fe(III) oxide reduction potential in Chocolate Pots hot spring, Yellowstone National Park

(2016) N. W. Fortney et al.   Geobiology

Extracellular electron transfer mechanisms between microorganisms and minerals

(2016) Liang Shi et al.   NATURE REVIEWS MICROBIOLOGY

Restricted diversity of dental calculus methanogens over five centuries, France

(2016) Hong T. T. Huynh et al.   Scientific Reports

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Functional Classification of Uncultured “Candidatus Caldiarchaeum subterraneum” Using the Maple System

(2015) Hideto Takami et al.   PLoS One

Diversity and morphological structure of bacterial communities inhabiting the Diana-Hygieia Thermal Spring (Budapest, Hungary)

(2014) Dóra Anda et al.   ACTA MICROBIOLOGICA ET IMMUNOLOGICA HUNGARICA

Binning metagenomic contigs by coverage and composition

(2014) Johannes Alneberg et al.   NATURE METHODS

Ancient Aqueous Environments at Endeavour Crater, Mars

(2014) R. E. Arvidson et al.   SCIENCE

A trans-outer membrane porin-cytochrome protein complex for extracellular electron transfer byGeobacter sulfurreducens PCA

(2014) Yimo Liu et al.   Environmental Microbiology Reports

Genomic analyses of bacterial porin-cytochrome gene clusters

(2014) Liang Shi et al.   Frontiers in Microbiology

PhyloSift: phylogenetic analysis of genomes and metagenomes

(2014) Aaron E. Darling et al.   PeerJ

Iron Isotope Characteristics of Hot Springs at Chocolate Pots, Yellowstone National Park

(2013) Lingling Wu et al.   ASTROBIOLOGY

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

(2013) Mads Albertsen et al.   NATURE BIOTECHNOLOGY

A Habitable Fluvio-Lacustrine Environment at Yellowknife Bay, Gale Crater, Mars

(2013) J. P. Grotzinger et al.   SCIENCE

Characterization ofMelioribacter roseusgen. nov., sp. nov., a novel facultatively anaerobic thermophilic cellulolytic bacterium from the classIgnavibacteria, and a proposal of a novel bacterial phylumIgnavibacteriae

(2012) Olga A. Podosokorskaya et al.   ENVIRONMENTAL MICROBIOLOGY

Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

(2012) Daniel H. Huson et al.   SYSTEMATIC BIOLOGY

Deferrisoma camini gen. nov., sp. nov., a moderately thermophilic, dissimilatory iron(III)-reducing bacterium from a deep-sea hydrothermal vent that forms a distinct phylogenetic branch in the Deltaproteobacteria

(2011) G. B. Slobodkina et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Moorella humiferrea sp. nov., a thermophilic, anaerobic bacterium capable of growth via electron shuttling between humic acid and Fe(III)

(2011) Y. N. Nepomnyashchaya et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Cultivation-independent characterization of ‘Candidatus Magnetobacterium bavaricum’ via ultrastructural, geochemical, ecological and metagenomic methods

(2010) C. Jogler et al.   ENVIRONMENTAL MICROBIOLOGY

Culture-independent characterization of a novel, uncultivated magnetotactic member of the Nitrospirae phylum

(2010) Christopher T. Lefèvre et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial biodiversity from Roopkund Glacier, Himalayan mountain ranges, India

(2010) Suman Pradhan et al.   EXTREMOPHILES

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments

(2010) Kai Zhuang et al.   ISME Journal

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

(2010) Katharina F. Ettwig et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

MICROBIAL BIOSIGNATURES IN IRON-MINERALIZED PHOTOTROPHIC MATS AT CHOCOLATE POTS HOT SPRINGS, YELLOWSTONE NATIONAL PARK, UNITED STATES

(2010) M. N. PARENTEAU et al.   PALAIOS

DNA Stable-Isotope Probing (DNA-SIP)

(2010) Eric A. Dunford et al.   Jove-Journal of Visualized Experiments

Genomic Analysis of "Elusimicrobium minutum," the First Cultivated Representative of the Phylum "Elusimicrobia" (Formerly Termite Group 1)

(2009) D. P. R. Herlemann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ignavibacterium album gen. nov., sp. nov., a moderately thermophilic anaerobic bacterium isolated from microbial mats at a terrestrial hot spring and proposal of Ignavibacteria classis nov., for a novel lineage at the periphery of green sulfur bacteria

(2009) T. Iino et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Characterization of an electron conduit between bacteria and the extracellular environment

(2009) Robert S. Hartshorne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Iron Isotope Fingerprints of Redox and Biogeochemical Cycling in Modern and Ancient Earth

(2008) Clark M. Johnson et al.   Annual Review of Earth and Planetary Sciences

Thermodesulfovibrio aggregans sp. nov. and Thermodesulfovibrio thiophilus sp. nov., anaerobic, thermophilic, sulfate-reducing bacteria isolated from thermophilic methanogenic sludge, and emended description of the genus Thermodesulfovibrio

(2008) Y. Sekiguchi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The roles of acetotrophic and hydrogenotrophic methanogens during anaerobic conversion of biomass to methane: a review

(2008) Burak Demirel et al.   REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY