Time-Scaled Evolutionary Analysis of the Transmission and Antibiotic Resistance Dynamics of Staphylococcus aureus Clonal Complex 398

Unifying Viral Genetics and Human Transportation Data to Predict the Global Transmission Dynamics of Human Influenza H3N2

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Genome Analysis of Staphylococcus aureus ST291, a Double Locus Variant of ST398, Reveals a Distinct Genetic Lineage

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Historical Zoonoses and Other Changes in Host Tropism of Staphylococcus aureus, Identified by Phylogenetic Analysis of a Population Dataset

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Sources of Antimicrobial Resistance

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Distinguishable Epidemics of Multidrug-Resistant Salmonella Typhimurium DT104 in Different Hosts

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Reconstructing Geographical Movements and Host Species Transitions of Foot-and-Mouth Disease Virus Serotype SAT 2

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Staphylococcus aureus CC398 Clade Associated with Human-to-Human Transmission

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Molecular dating of human-to-bovid host jumps by Staphylococcus aureus reveals an association with the spread of domestication

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Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus

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Human Origin for Livestock-Associated Methicillin-Resistant Staphylococcus aureus

(2012) J. R. Fitzgerald   mBio

Identification of a Highly Transmissible Animal-Independent Staphylococcus aureus ST398 Clone with Distinct Genomic and Cell Adhesion Properties

(2012) A.-C. Uhlemann et al.   mBio

Staphylococcus aureus CC398: Host Adaptation and Emergence of Methicillin Resistance in Livestock

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Molecular characterization of Staphylococcus aureus from outpatients in the Caribbean reveals the presence of pandemic clones

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Detection of recombination events in bacterial genomes from large population samples

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Persistence of Livestock Associated MRSA CC398 in Humans Is Dependent on Intensity of Animal Contact

(2011) Haitske Graveland et al.   PLoS One

Characterization of methicillin-resistant Staphylococcus aureus ST398 from cases of bovine mastitis

(2010) A. Fessler et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

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New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Measuring the effect of enhanced cleaning in a UK hospital: a prospective cross-over study

(2009) Stephanie J Dancer et al.   BMC Medicine

First isolation of MRSA ST398 from UK animals: a new challenge for infection control teams?

(2009) A. Loeffler et al.   JOURNAL OF HOSPITAL INFECTION

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

Fast, accurate and simulation-free stochastic mapping

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