Global Transcriptional Response of Clostridium difficile Carrying the ϕCD38-2 Prophage

Spontaneously Induced Prophages in Lactobacillus gasseri Contribute to Horizontal Gene Transfer

(2014) J. L. Baugher et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

What Does the Talking?: Quorum Sensing Signalling Genes Discovered in a Bacteriophage Genome

(2014) Katherine R. Hargreaves et al.   PLoS One

Abundant and Diverse Clustered Regularly Interspaced Short Palindromic Repeat Spacers in Clostridium difficile Strains and Prophages Target Multiple Phage Types within This Pathogen

(2014) K. R. Hargreaves et al.   mBio

Genetically Diverse Clostridium difficile Strains Harboring Abundant Prophages in an Estuarine Environment

(2013) K. R. Hargreaves et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Lytic Infection of Lactococcus lactis by Bacteriophages Tuc2009 and c2 Triggers Alternative Transcriptional Host Responses

(2013) S. Ainsworth et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

X-ray structure of a superinfection exclusion lipoprotein from phage TP-J34 and identification of the tape measure protein as its target

(2013) Cecilia Bebeacua et al.   MOLECULAR MICROBIOLOGY

Importance of prophages to evolution and virulence of bacterial pathogens

(2013) Louis-Charles Fortier et al.   Virulence

Genome-Wide Identification of Regulatory RNAs in the Human Pathogen Clostridium difficile

(2013) Olga A. Soutourina et al.   PLoS Genetics

Evidence ofIn VivoProphage Induction during Clostridium difficile Infection

(2012) Mathieu Meessen-Pinard et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prophage Carriage and Diversity within Clinically Relevant Strains of Clostridium difficile

(2012) Jinyu Shan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Emergence and global spread of epidemic healthcare-associated Clostridium difficile

(2012) Miao He et al.   NATURE GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Diverse Temperate Bacteriophage Carriage in Clostridium difficile 027 Strains

(2012) Janet Y. Nale et al.   PLoS One

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

(2011) T. Carver et al.   BIOINFORMATICS

Epidemiology and control of Clostridium difficile infections in healthcare settings

(2011) Frédéric Barbut et al.   CURRENT OPINION IN INFECTIOUS DISEASES

Prophage-Stimulated Toxin Production in Clostridium difficile NAP1/027 Lysogens

(2011) O. Sekulovic et al.   JOURNAL OF BACTERIOLOGY

Genetic Response to Bacteriophage Infection in Lactococcus lactis Reveals a Four-Strand Approach Involving Induction of Membrane Stress Proteins, D-Alanylation of the Cell Wall, Maintenance of Proton Motive Force, and Energy Conservation

(2011) V. Fallico et al.   JOURNAL OF VIROLOGY

The Clostridium difficile Cell Wall Protein CwpV is Antigenically Variable between Strains, but Exhibits Conserved Aggregation-Promoting Function

(2011) Catherine B. Reynolds et al.   PLoS Pathogens

Genome analysis of the Clostridium difficile phage ΦCD6356, a temperate phage of the Siphoviridae family

(2010) Marianne Horgan et al.   GENE

Bacteriophage resistance mechanisms

(2010) Simon J. Labrie et al.   NATURE REVIEWS MICROBIOLOGY

N15: The linear phage–plasmid

(2010) Nikolai V. Ravin   PLASMID

Prophage Spontaneous Activation Promotes DNA Release Enhancing Biofilm Formation in Streptococcus pneumoniae

(2010) Margarida Carrolo et al.   PLoS One

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Comparative Analyses of Prophage-Like Elements Present in Bifidobacterial Genomes

(2009) M. Ventura et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The role of interactions between phage and bacterial proteins within the infected cell: a diverse and puzzling interactome

(2009) Bart Roucourt et al.   ENVIRONMENTAL MICROBIOLOGY

Bacteriophage-Mediated Toxin Gene Regulation in Clostridium difficile

(2009) R. Govind et al.   JOURNAL OF VIROLOGY

A novel genetic switch controls phase variable expression of CwpV, aClostridium difficilecell wall protein

(2009) Jenny E. Emerson et al.   MOLECULAR MICROBIOLOGY

Clostridium difficile infection: new developments in epidemiology and pathogenesis

(2009) Maja Rupnik et al.   NATURE REVIEWS MICROBIOLOGY

The Secret Life of the Anthrax Agent Bacillus anthracis: Bacteriophage-Mediated Ecological Adaptations

(2009) Raymond Schuch et al.   PLoS One

High-throughput quantification of splicing isoforms

(2009) J.-P. Brosseau et al.   RNA

Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium

(2009) Richard A Stabler et al.   GENOME BIOLOGY

Molecular Characterization of a Clostridium difficile Bacteriophage and Its Cloned Biologically Active Endolysin

(2008) M. J. Mayer et al.   JOURNAL OF BACTERIOLOGY

Streptococcus pyogenes pSM19035 requires dynamic assembly of ATP-bound ParA and ParB on parS DNA during plasmid segregation

(2008) Florencia Pratto et al.   NUCLEIC ACIDS RESEARCH