Streptomycin Application Has No Detectable Effect on Bacterial Community Structure in Apple Orchard Soil

Unexpected Diversity during Community Succession in the Apple Flower Microbiome

(2013) A. Shade et al.   mBio

Culturing captures members of the soil rare biosphere

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The human microbiome: at the interface of health and disease

(2012) Ilseung Cho et al.   NATURE REVIEWS GENETICS

Effect of Streptomycin Treatment on Bacterial Community Structure in the Apple Phyllosphere

(2012) Erika Yashiro et al.   PLoS One

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

Changes in functional diversity of soil microbial community with addition of antibiotics sulfamethoxazole and chlortetracycline

(2011) Feng Liu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Culture-dependent and culture-independent assessment of bacteria in the apple phyllosphere

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Metagenomic Analysis of Apple Orchard Soil Reveals Antibiotic Resistance Genes Encoding Predicted Bifunctional Proteins

(2010) J. J. Donato et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effect of antibiotics in the environment on microbial populations

(2010) Chang Ding et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Navigating the multiple meanings of β diversity: a roadmap for the practicing ecologist

(2010) Marti J. Anderson et al.   ECOLOGY LETTERS

Microbial community resemblance methods differ in their ability to detect biologically relevant patterns

(2010) Justin Kuczynski et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Call of the wild: antibiotic resistance genes in natural environments

(2010) Heather K. Allen et al.   NATURE REVIEWS MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial communities of two contrasting soils reacted differently to lincomycin treatment

(2008) Ladislav Čermák et al.   APPLIED SOIL ECOLOGY

Contrasting Microbial Community Assembly Hypotheses: A Reconciling Tale from the Río Tinto

(2008) Carmen Palacios et al.   PLoS One