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Evolutionary insight from whole-genome sequencing of experimentally evolved microbes

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Experimental Evolution of a Facultative Thermophile from a Mesophilic Ancestor

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A simple method for the parallel deep sequencing of full influenza A genomes

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Efficient production of succinic acid from corn stalk hydrolysates by a recombinant Escherichia coli with ptsG mutation

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Microbial experimental evolution

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Toward a General Theory of Adaptive Radiation

(2009) Rees Kassen   Annals of the New York Academy of Sciences

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Genome evolution and adaptation in a long-term experiment with Escherichia coli

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

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Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations

(2009) Tom M Conrad et al.   GENOME BIOLOGY