Review
Immunology
Diya Hu, Aaron T. Irving
Summary: This article introduces the activation mechanism of adaptive immunity following viral infections and focuses on the importance of studying and mapping epitopes. It also discusses the principles, advantages, and disadvantages of the latest epitope mapping techniques, using viral antigen discovery as examples.
FRONTIERS IN IMMUNOLOGY
(2023)
Article
Urology & Nephrology
Xiao-dan Zhang, Cai-xia Lin, Zhao Cui, Qiu-hua Gu, Bing-jia Yan, Lei Liu, Wen-chao Song, Yi Shi, Hanna Debiec, Pierre Ronco, Ming-hui Zhao
Summary: Ten potential T-cell epitopes for membranous nephropathy were identified in the domains of PLA2R.
KIDNEY INTERNATIONAL
(2023)
Article
Agriculture, Multidisciplinary
Li Li Xu, Maria Gasset, Hong Lin, Chuang Yu, Jin Long Zhao, Xue Wen Dang, Zhen Xing Li
Summary: Efficient peptide-based immunotherapy for shrimp allergy relies on identifying the dominant T-cell epitopes of tropomyosin. This study identified and characterized T-cell epitopes in Lit v 1 using immunoinformatic tools, T-cell proliferation, cytokine release, IgG/IgE binding, and degranulation assays. Results showed that one predicted T-cell epitope (T2: VQESLLKANIQLVEK, 60-74) promoted T-cell proliferation, IL-2 release, and upregulated Th2-associated cytokine secretion without IgG/IgE binding and degranulation activities, making it a candidate for vaccine development.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
(2021)
Article
Immunology
William D. Chronister, Austin Crinklaw, Swapnil Mahajan, Randi Vita, Zeynep Kosaloglu-Yalcin, Zhen Yan, Jason A. Greenbaum, Leon E. Jessen, Morten Nielsen, Scott Christley, Lindsay G. Cowell, Alessandro Sette, Bjoern Peters
Summary: The study introduces a new tool called TCR Match, which aims to identify epitope specificity of T cell receptors by comparing sequence similarities, providing new insights for the development of strategies for monitoring and treating infectious, allergic, autoimmune diseases, and cancer.
FRONTIERS IN IMMUNOLOGY
(2021)
Review
Immunology
Anna-Lisa Schaap-Johansen, Milena Vujovic, Annie Borch, Sine Reker Hadrup, Paolo Marcatili
Summary: This review focuses on computational tools for epitope prediction, particularly those aimed at identifying neoepitopes for use in immunotherapy for cancer treatment. It covers how these tools work, the type of data they utilize, as well as the pros and cons of their applications.
FRONTIERS IN IMMUNOLOGY
(2021)
Article
Immunology
Alex Olvera, Samandhy Cedeno, Anuska Llano, Beatriz Mothe, Jorge Sanchez, Gemma Arsequell, Christian Brander
Summary: Post-translational protein modifications, particularly glycosylation, may impact T cell epitope recognition presented by HLA molecules, but this aspect has been overlooked in HIV research. Studies demonstrated that glycosylation can affect T cell recognition of viral peptides in individuals with chronic HIV infection, indicating the potential importance of glyco-epitope specific T cell immunity in understanding host immune responses against viral infections. New methodologies are needed to accurately assess the role of glycosylation in altering T cell immunity to viral infections.
FRONTIERS IN IMMUNOLOGY
(2021)
Article
Cell Biology
Luo Li, Qian Chen, Xiaojian Han, Meiying Shen, Chao Hu, Siyin Chen, Jing Zhang, Yingming Wang, Tingting Li, Jingjing Huang, Shenglong Li, Yanan Hao, Aishun Jin
Summary: This study identified the presence of SARS-CoV-2-specific T cells in the blood of COVID-19 convalescents, with stronger response in the non-RBD region. CD4(+) T cells specific to SARS-CoV-2 S exhibited higher frequency than CD8(+) T cells in recovered patients, indicating potential implications for vaccine development and new therapies against COVID-19.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
(2021)
Article
Virology
Haiwen Chen, Xiao Zhang, Shanshan Zhang, Xiaobing Duan, Tong Xiang, Xiang Zhou, Wanlin Zhang, Xinyu Zhang, Qisheng Feng, Yinfeng Kang, Jiangping Li, Lan Deng, Liang Wang, Xing Lv, Musheng Zeng, Yi-Xin Zeng, Miao Xu
Summary: The study identified novel gB T cell epitopes and revealed that inherent gB-specific CD8(+) T cell responses in EBV carriers are associated with EBV reactivation. Additionally, most gB epitopes were found to be conserved among different EBV strains.
JOURNAL OF VIROLOGY
(2021)
Article
Biochemistry & Molecular Biology
Yimin Wen, Rui Chen, Junpeng Yang, Enbo Yu, Weizhe Liu, Yijie Liao, Yiping Wen, Rui Wu, Qin Zhao, Senyan Du, Qigui Yan, Xinfeng Han, Sanjie Cao, Xiaobo Huang
Summary: This study predicted T-cell epitopes of porcine deltacoronavirus (PDCoV) structural proteins using computational methods. Five peptides were identified as potential T-cell epitope candidates, with high levels of interferon-gamma (IFN-γ) responses. A multi-epitope peptide combining these five epitopes (5T) was synthesized and evaluated for its immune response and protection efficacy in a piglet model. The results provide valuable information for the design of epitope-based vaccines.
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES
(2023)
Review
Food Science & Technology
Fanlin Zhou, Shudong He, Hanju Sun, Yongfei Wang, Yi Zhang
Summary: This article systematically reviews the research progress and development trend of food epitope mapping technology, providing a reference for the identification and characterization of food allergens. Novel technologies have advantages in specificity, sensitivity, accuracy, and throughput, but there is still work needed for invention of new mapping technology, establishment of databases, and development of allergic omics.
TRENDS IN FOOD SCIENCE & TECHNOLOGY
(2021)
Article
Immunology
Laia Bosch-Camos, Elisabet Lopez, Maria Jesus Navas, Sonia Pina-Pedrero, Francesc Accensi, Florencia Correa-Fiz, Chankyu Park, Montserrat Carrascal, Javier Dominguez, Maria Luisa Salas, Veljko Nikolin, Javier Collado, Fernando Rodriguez
Summary: The development of subunit vaccines against African swine fever is hindered by limited knowledge of specific ASF virus antigens and the identity of CD8(+) T-cell determinants. Various strategies were used to identify these antigens, leading to the characterization of ASFV-specific epitopes. Multiple approaches were used to identify the same ASFV determinants, reinforcing the presented results.
Article
Immunology
Swan Tan, Andres Hazaet Gutierrez, Phillip Charles Gauger, Tanja Opriessnig, Justin Bahl, Leonard Moise, Anne Searls De Groot
Summary: The study suggests that conserved T cell epitopes can have a disease-mitigating effect on influenza, with differences in conservation levels between circulating and vaccine strains potentially explaining variations in vaccine efficacy. Conserved T cell epitope vaccines may serve as a useful adjunct to commercial flu vaccines, particularly when antibodies are not cross-reactive, in order to improve protection against influenza.
Article
Cell Biology
Karolin I. Wagner, Laura M. Mateyka, Sebastian Jarosch, Vincent Grass, Simone Weber, Kilian Schober, Monika Hammel, Teresa Burrell, Behnam Kalali, Holger Poppert, Henriette Beyer, Sophia Schambeck, Stefan Holdenrieder, Andrea Strotges-Achatz, Verena Haselmann, Michael Neumaier, Johanna Erber, Alina Priller, Sarah Yazici, Hedwig Roggendorf, Marcus Odendahl, Torsten Tonn, Andrea Dick, Klaus Witter, Hrvoje Mijocevic, Ulrike Protzer, Percy A. Knolle, Andreas Pichlmair, Claudia S. Crowell, Markus Gerhard, Elvira D'Ippolito, Dirk H. Busch
Summary: This study isolated TCR repertoires specific for SARS-CoV-2 epitopes restricted to common HLA class I molecules in convalescent individuals. SARS-CoV-2-specific CD8(+) T cells were found to be detectable up to 12 months after infection. The TCR repertoires were diverse, with heterogeneous functional avidity and cytotoxicity towards virus-infected cells.
Article
Biology
Nicholas Borcherding, Ajaykumar Vishwakarma, Andrew P. Voigt, Andrew Bellizzi, Jacob Kaplan, Kenneth Nepple, Aliasger K. Salem, Russell W. Jenkins, Yousef Zakharia, Weizhou Zhang
Summary: The study utilized single-cell RNA sequencing to analyze the tumor immune microenvironment of ccRCC patients and found an increase in CD8(+) T cells and macrophages in tumor-infiltrated immune cells, as well as identified a proliferation subpopulation associated with the progression of ccRCC. Utilizing gene expression analysis, the study also demonstrated the ability to predict clinical outcomes and pathological diseases based on subcluster assignment.
COMMUNICATIONS BIOLOGY
(2021)
Article
Pharmacology & Pharmacy
Shivani Verma, Kaushlesh Singh, Anju Bansal
Summary: The study demonstrated that computationally designed multi-epitope DnaK peptide vaccine candidates showed significant protective immunity in mice, including stimulation of cellular immunity and long-lasting antibody memory response. These vaccine candidates (DP1, DP5 and DP7) can provide significant increase in survivability against typhoid infection.
PHARMACOLOGICAL RESEARCH
(2021)