4.5 Article

An aptamer-based fluorescent biosensor for potassium ion detection using a pyrene-labeled molecular beacon

期刊

ANALYTICAL BIOCHEMISTRY
卷 400, 期 1, 页码 99-102

出版社

ACADEMIC PRESS INC ELSEVIER SCIENCE
DOI: 10.1016/j.ab.2009.12.034

关键词

Potassium ions; Aptamer; Pyrene; DNA biosensor

资金

  1. National High-tech R&D Program (863 Program) [2007AA09Z113]
  2. Doctors in Qingdao University of Science and Technology [0022335]

向作者/读者索取更多资源

A novel and sensitive biosensor based on aptamer and pyrene-labeled fluorescent probes for the determination of K+ was developed. The aptamer was used as a molecular recognition element and a partially complementary oligonucleotide with the aptamer was labeled by pyrene moieties at both ends to transduce the binding event of K+ with aptamer. In the presence of K+, the complementary oligonucleotides were displaced from aptamers, which was accompanied by excimer fluorescence of pyrenes because the self-hairpin structure of the complementary oligonucleotide brought pyrene moieties into close proximity. However, it gave only monomer emission in the absence of K+. Under optimum conditions, the relative fluorescence intensity of pyrene was proportional to the concentration of K+ in the range of 6.0 x 10(-4) to 2.0 x 10(-2) M. A detection limit of 4.0 x 10(-4) M was achieved. Moreover, this method was able to detect K+ with high selectivity in the presence of Na+, NH4+, Mg2+, and Ca2+ ions of biological fluids. In brief, the assay may have great potential applications, especially in a biological environment because of its simplicity, sensitivity, and specificity. (C) 2009 Elsevier Inc. All rights reserved.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.5
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Engineering, Environmental

A novel ICT-based chemosensor for F- and its application in real samples and bioimaging

Xiaochun Wang, Tiechun Li, Cuiping Ma

Summary: The novel fluorescent chemosensor MQS-Si shows highly sensitive detection of F- in solution, with a detection limit as low as 30 nM. Its application in selective detection in drinking water, urine, serum samples, as well as fluorescence imaging in living cells and zebrafish, demonstrates its potential utility in vitro and in vivo.

JOURNAL OF HAZARDOUS MATERIALS (2021)

Article Chemistry, Analytical

An ultra-fast, one-step RNA amplification method for the detection of Salmonella in seafood

Xiaoli Zhao, Jian Zhang, Yake Duan, Qianyi Wan, Xin Zhang, Jiao Chen, Chao Shi, Yan Gao, Cuiping Ma

Summary: This study reports an accelerated strand exchange amplification (ASEA) method for ultra-fast, one-step RNA amplification detection of Salmonella in seafood. The ASEA method combines high sensitivity and specificity, and can complete the entire detection process in a short time.

ANALYTICAL METHODS (2022)

Article Chemistry, Analytical

Real-time monitoring of isothermal nucleic acid amplification on a smartphone by using a portable electrochemical device for home-testing of SARS-CoV-2

Qi Li, Yang Li, Qian Gao, Chao Jiang, Qingwu Tian, Cuiping Ma, Chao Shi

Summary: Home-testing of SARS-CoV-2 is an ideal approach for controlling the COVID-19 pandemic and addressing the shortage of medical resources. A portable device was developed for real-time monitoring of isothermal nucleic acid amplification tests (INAATs) through the electrochemistry method. The device features a pH-sensitive potentiometric sensor for label-free detection of nucleic acid and a Bluetooth module for real-time monitoring on smartphones. The device demonstrated sensitivity and comparability with fluorescence and colorimetric assays.

ANALYTICA CHIMICA ACTA (2022)

Article Food Science & Technology

An all-in-one nucleic acid enrichment and isothermal amplification platform for rapid detection of Listeria monocytogenes

Yong Li, Chunyu Yan, Jiao Chen, Yunyun Lian, Yingqiu Xie, Amr Amin, Qianyi Wan, Chao Shi, Cuiping Ma

Summary: This study developed an all-in-one platform for rapid and sensitive detection of Listeria monocytogenes. The platform integrates nucleic acid extraction, amplification, and visual detection in a single tube, and achieves high detection sensitivity using specific primers. Additionally, the method simplifies the use of detection equipment.

FOOD CONTROL (2022)

Article Chemistry, Analytical

Single-walled carbon nanotubes-based RNA protection and extraction improves RT-qPCR sensitivity for SARS-CoV-2 detection

Yong Li, Xiangning Han, Xiaofeng Mu, Ye Wang, Chao Shi, Cuiping Ma

Summary: The false-negative result of nucleic acid testing is one of the important causes of COVID-19 transmission. This study developed a method using single-walled carbon nanotubes (SWCNTs) to protect and extract SARS-CoV-2 RNA, improving the sensitivity of RT-qPCR detection by 8-32 fold. The protection of RNA by SWCNTs allows for increased RNA load in downstream assays.

ANALYTICA CHIMICA ACTA (2023)

Article Chemistry, Analytical

Rapid, specific and sensitive detection of Vibrio parahaemolyticus in seafood by accelerated strand exchange amplification

Ritong Sun, Jiao Chen, Yingeng Wang, Zheng Zhang, Yong Li, Fengmei Li, Cuiping Ma, Qingxia Han, Yanjing Shi

Summary: A highly sensitive and specific real-time narrow thermal-cycling amplification detection method based on accelerated strand exchange amplification (ASEA) was developed for the detection of Vibrio parahaemolyticus. The method can detect low concentrations of Vibrio parahaemolyticus in cultured samples and artificially spiked scallop meat within a short time. It is a useful tool for rapid detection of Vibrio parahaemolyticus in seafood samples.

ANALYTICAL METHODS (2023)

Article Chemistry, Analytical

Boron nitride nanoplate-based improvement of the specificity and sensitivity in loop-mediated isothermal amplification for Vibrio parahaemolyticus detection

Yong Li, Shuo Lin, Yuxin Xue, Qianyue Jia, Ye Wang, Yingqiu Xie, Chao Shi, Cuiping Ma

Summary: BNNPs have been proven to significantly improve the specificity and sensitivity of PCR and LAMP amplification reactions, expanding the application range of nucleic acid detection and increasing detection sensitivity.

ANALYTICA CHIMICA ACTA (2023)

Article Agriculture, Multidisciplinary

The detection of Bursaphelenchus xylophilus via accelerated strand exchange amplification: An ultra-rapid and accurate method

Xiujuan Wang, Jiao Chen, Jinxiu Zhang, Yake Duan, Xin Zhang, Chao Shi, Yong Li, Cuiping Ma

Summary: This study developed a rapid and accurate method for detecting the pinewood nematode, with the entire detection process taking only 30 minutes. The method demonstrated high specificity and a low detection limit, successfully detecting the nematode in actual pinewood samples.

ANNALS OF APPLIED BIOLOGY (2023)

Article Chemistry, Analytical

A homogeneous hybridization magnetic biosensor based on electric field assistance for ultrafast nucleic acid detection

Jinling Cui, Ritong Sun, Xiaoli Zhao, Mingyuan Zhao, Xiaojun Zhang, Yong Li, Lei Wang, Chao Shi, Cuiping Ma

Summary: In this study, an electrochemical DNA biosensor based on homogeneous hybridization in solution was designed for nucleic acid detection without probe immobilization. The magnetic biosensor constructed in this study could detect targets over a good linear dynamic range spanning 100 pM to 100 nM in 400 s, while those involving conventional hybridization methods always take 2 h or more. This strategy showed high specificity due to the specific binding of streptavidin and biotin. The homogenous hybridization magnetic biosensor constructed with electric field assistance presents a potential diagnostic method for rapid DNA detection and provides a new idea for rapid nucleic acid detection in clinical practice.

ANALYTICAL METHODS (2023)

Article Chemistry, Analytical

Rapid and sensitive detection of Staphylococcus aureus via an all-in-one staggered strand exchange amplification platform

Jian Zhang, Xiangning Han, Ye Wang, Xiaofeng Mu, Chao Shi, Yong Li, Cuiping Ma

Summary: In this study, a staggered strand exchange amplification (SSEA) method was developed to detect Staphylococcus aureus with high specificity and efficiency at a constant temperature. The sensitivity of SSEA was 20 times that of the traditional method. An all-in-one SSEA platform was established by incorporating magnetic bead-based DNA extraction, which further enhanced the sensitivity of SSEA by two orders of magnitude. The SSEA platform showed high specificity and the ability to detect S. aureus in meat samples within 1 hour without a bacterial enrichment step, making it a promising tool for the food safety industry.

ANALYST (2023)

Article Chemistry, Multidisciplinary

Denaturation bubble-mediated two-stage isothermal nucleic acid amplification in a single closed tube

Jinling Guo, Yang Li, Qing Wang, Qianqian Jiang, Xinguang Zhang, Peng Zhang, Cuiping Ma, Chao Shi

Summary: Here, we developed a two-stage isothermal amplification method using strand exchange amplification and hyperbranched rolling circle amplification. This method only requires one DNA polymerase and can be performed in a single closed tube at a constant temperature, offering a promising signal amplification strategy for accurate and rapid pathogen detection in clinical settings.

CHEMICAL COMMUNICATIONS (2023)

Article Chemistry, Analytical

Real-time detection of SARS-CoV-2 in clinical samples via ultrafast ligation-dependent RNA transcription amplification

Peng Zhang, Yang Li, Dongmei Zhang, Xinghao Zhu, Jinling Guo, Cuiping Ma, Chao Shi

Summary: RNA detection is crucial for controlling epidemics, and an ultrafast ligation-dependent RNA transcription amplification assay called SCAN is developed for real-time detection of SARS-CoV-2. The assay can be completed within 30-50 minutes and has a limit of detection of 10(4) copies per mL. The results show great agreement with commonly used detection methods, indicating its potential in clinical practice.

ANALYTICAL METHODS (2023)

Article Chemistry, Analytical

Engineering of a Chimeric Template Triggers RNase H-Based Isothermal Amplification Approach for Sensitive Detection of Pathogen RNA

Yong Li, Xin Zhang, Yu Liao, Chao Shi, Ye Wang, Xiaofeng Mu, Yingqiu Xie, Cuiping Ma

Summary: RNA-based detection of pathogenic organisms is a crucial field of research for disease diagnosis and environmental and food safety. Researchers have proposed a novel method for rapidly identifying long-stranded RNA using a rationally designed RNA-DNA structural template and RNase H reaction. This method is highly efficient, rapid, and flexible, making it a powerful tool for detecting long-stranded RNA and shedding light on pathogen detection in food safety and molecular diagnosis.

ANALYTICAL CHEMISTRY (2023)

Article Chemistry, Multidisciplinary

A carbon dot-based Co-nanozyme with alkaline phosphatase - mechanism and application

Haiyan Fan, Kanat Dukenbayev, Qinglei Sun, Medina Khamijan, Akhrorbek Turdaliyev, Alibek Ysmaiyl, Aigerim Tassanbiyeva, Cuiping Ma, Yingqiu Xie

Summary: In this study, the addition of cauliflower-derived carbon dots was found to enhance alkaline phosphatase (ALP) activity, serving as a potential sensor for ALP. The combination of ALP and CFCDs exhibited typical Michaelis Menten kinetic behavior with improved kinetics and increased dephosphorylated product yield. Development of a CFCD-based paper strip assay allowed sensitive detection of elevated ALP levels and visualization of cancer stem cells or proteins.

RSC ADVANCES (2021)

Article Chemistry, Multidisciplinary

Nano-evolution and protein-based enzymatic evolution predicts novel types of natural product nanozymes of traditional Chinese medicine: cases of herbzymes of Taishan-Huangjing (Rhizoma polygonati) and Goji (Lycium chinense)

Guldan Nazarbek, Aidana Kutzhanova, Lazzat Nurtay, Chenglin Mu, Bexultan Kazybay, Xugang Li, Cuiping Ma, Amr Amin, Yingqiu Xie

Summary: Researchers successfully predicted novel enzymes using a protein evolution analysis method, with experimental validation. Nanozymes are mainly classified as protein-based oxidoreductases, while peroxidase and lyase are the most conserved enzyme types in natural products. By simulating the evolution of natural protein enzymes, new natural nanozymes with lyase and peroxidase activities were discovered in Rhizoma polygonati and Goji herb extracts.

NANOSCALE ADVANCES (2021)

Article Biochemical Research Methods

Cationic and anionic detergent buffers in sequence yield high-quality genomic DNA from diverse plant species

Saranya Krishnan, Shina Sasi, Preshobha Kodakkattumannil, Salima Al Senaani, Geetha Lekshmi, Martin Kottackal, Khaled M. A. Amiri

Summary: This study aimed to develop an efficient DNA extraction protocol suitable for diverse plant species and tissues. A reliable and consistent protocol was described for the extraction of high-quality DNA from difficult-to-extract plant species. The optimized protocol was successful in extracting high-quality DNA from various plant species and tissues, making it useful for genomic studies of recalcitrant plants.

ANALYTICAL BIOCHEMISTRY (2024)

Article Biochemical Research Methods

Pyrophosphate detection method using 5-Br-PAPS to detect nucleic acid amplification - Application to LAMP method

Eisaku Hokazono, Saori Fukumoto, Takeshi Uchiumi, Susumu Osawa

Summary: This study proposes a method for detecting nucleic acid amplification using pyrophosphate, which requires only two reagents and an automated analyzer. The technique has high sensitivity and reproducibility, and can detect pyrophosphate within 10 minutes. Therefore, this method has the potential to be a new, rapid, and simple detection technique for amplified nucleic acids.

ANALYTICAL BIOCHEMISTRY (2024)

Article Biochemical Research Methods

SURE gel electrophoresis: A method for improved detection and purification of dilute nucleic acid samples

Drew S. Sowersby, L. Kevin Lewis

Summary: SURE electrophoresis is a new method for concentrating samples in gels, which allows efficient detection of highly dilute DNA samples. This approach generates single bands with enhanced signal intensities and minimal band broadening.

ANALYTICAL BIOCHEMISTRY (2024)

Article Biochemical Research Methods

Echinacoside regulates PI3K/AKT/HIF-1α/VEGF cross signaling axis in proliferation and apoptosis of breast cancer

Hongyi Liang, Guoliang Yin, Guangxi Shi, Zhiyong Liu, Xiaofei Liu, Jingwei Li

Summary: The mechanism of Echinacoside (ECH) in treating breast cancer (BC) was explored through network pharmacology and experimental validation. It was found that ECH plays an important role in anti-BC by regulating the PI3K/AKT/HIF-1 alpha/VEGF signaling pathway, and it exhibits multi-target and multi-pathway effects.

ANALYTICAL BIOCHEMISTRY (2024)

Article Biochemical Research Methods

Comparison of colorimetric, fluorometric, and liquid chromatography-mass spectrometry assays for acetyl-coenzyme A

Daniel S. Kantner, Emily Megill, Anna Bostwick, Vicky Yang, Carmen Bekeova, Alexandria Van Scoyk, Erin L. Seifert, Michael W. Deininger, Nathaniel W. Snyder

Summary: This study compared the results of different methods for measuring the amount of acetyl-Coenzyme A. The colorimetric ELISA kit did not produce interpretable results, while the fluorometric enzymatic kit showed comparable results to the LC-MS-based methods depending on the matrix and extraction conditions. LC-MS/MS and LC-HRMS methods produced well-aligned results, especially when using stable isotope-labeled internal standards.

ANALYTICAL BIOCHEMISTRY (2024)

Article Biochemical Research Methods

Synergistic co-catalytic nanozyme system for highly efficient one-pot colorimetric sensing at neutral pH: Combining molybdenum trioxide and Fe (III)-Modified covalent triazine framework

Jingyan Xu, Hanying Tan, Xionghui Ma, Linjing Su, Zhi Zhang, Yuhao Xiong

Summary: This study investigates the co-catalytic capabilities of MoO3 nanosheets in enhancing the enzyme-like catalytic activity of a two-dimensional ultrathin Fe(III)-modified covalent triazine framework (Fe-CTF) under neutral pH conditions. The Fe-CTF/MoO3 co-catalytic system exhibits enzyme-mimicking activity and enables the development of a colorimetric method for glucose detection. Furthermore, a straightforward one-pot colorimetric method is established for screening XOD inhibitors.

ANALYTICAL BIOCHEMISTRY (2024)

Article Biochemical Research Methods

A novel fusion technology utilizing complex network and sequence information for FAD-binding site identification

Lichao Zhang, Kang Xiao, Xueting Wang, Liang Kong

Summary: A novel fusion technology was designed to identify FAD-binding sites, achieving the best results on two independent test datasets and outperforming existing methods significantly. The high performance and certainty of the method were demonstrated through statistical tests and cross-entropy loss analysis.

ANALYTICAL BIOCHEMISTRY (2024)

Article Biochemical Research Methods

Investigation of the electrochemical properties of edoxaban using glassy carbon and boron-doped diamond electrodes and development of an eco-friendly and cost effective voltammetric method for its determination

Abdulkadir Kilic, Mehmet Aslan, Abdulkadir Levent

Summary: This study developed a simple, rapid, sensitive, and selective voltammetric technique for the electrochemical characterization and detection of the highly risky drug Edoxaban. The optimized voltammetric method showed good analytical working range and was successfully applied to urine and tablet samples.

ANALYTICAL BIOCHEMISTRY (2024)

Article Biochemical Research Methods

Application of liquid-based colorimetric method for high throughput screening of bioplastic-degrading strains using esterase assay

Su Hyun Kim, Nara Shin, Jong-Min Jeon, Jeong-Jun Yoon, Jeong Chan Joo, Hee Taek Kim, Shashi Kant Bhatia, Yung-Hun Yang

Summary: To address environmental issues caused by traditional plastics, bioplastics have gained attention as alternatives. Although bioplastics have better degradability, their degradation still takes longer than anticipated. This study proposes a novel screening method to identify bioplastic degraders faster, saving time and providing more quantitative data.

ANALYTICAL BIOCHEMISTRY (2024)

Article Biochemical Research Methods

Disposable biosensor based on ionic liquid, carbon nanofiber and poly (glutamic acid) for tyramine determination

Irem Okman Kocoglu, Pinar Esra Erden, Esma Kilic

Summary: In this study, an electrochemical biosensor based on carbon nanofibers and ionic liquid modification was constructed for tyramine detection. The biosensor showed linear response, low detection limit, high sensitivity, and exhibited good reproducibility, stability, and anti-interference ability.

ANALYTICAL BIOCHEMISTRY (2024)

Article Biochemical Research Methods

LAMPrimers iQ: New primer design software for loop-mediated isothermal amplification (LAMP)

Liana U. Akhmetzianova, Timur M. Davletkulov, Assol R. Sakhabutdinova, Alexey Chemeris, Irek M. Gubaydullin, Ravil R. Garafutdinov

Summary: A new program called LAMPrimers iQ has been developed for high-quality LAMP primer design, and its advantages in providing higher specificity and reliable detection of viral RNA were validated using SARS-CoV-2 coronavirus RNA as a model target.

ANALYTICAL BIOCHEMISTRY (2024)

Article Biochemical Research Methods

Direct competitive assay for HER2 detection in human plasma using Bloch surface wave-based biosensors

Tommaso Pileri, Alberto Sinibaldi, Agostino Occhicone, Norbert Danz, Elena Giordani, Matteo Allegretti, Frank Sonntag, Peter Munzert, Patrizio Giacomini, Francesco Michelotti

Summary: This study developed a biosensing device based on one-dimensional photonic crystal to detect HER2 in breast cancer. The device combines label-free and fluorescence operation modes, allowing for real-time and accurate detection in less than 20 minutes. It offers a promising technique for combined label-free and fluorescence detection in disease diagnosis and therapeutic monitoring.

ANALYTICAL BIOCHEMISTRY (2024)