Prediction of protein kinase-specific phosphorylation sites in hierarchical structure using functional information and random forest

Computational phosphorylation site prediction in plants using random forests and organism-specific instance weights

(2013) B. Trost et al.   BIOINFORMATICS

Age-dependent increases in tau phosphorylation in the brains of type 2 diabetic rats correlate with a reduced expression of p62

(2013) Hyun-Jung Jung et al.   EXPERIMENTAL NEUROLOGY

Construction of human activity-based phosphorylation networks

(2013) R. H. Newman et al.   Molecular Systems Biology

Reconstruction and Analysis of Transcription Factor–miRNA Co-Regulatory Feed-Forward Loops in Human Cancers Using Filter-Wrapper Feature Selection

(2013) Chen Peng et al.   PLoS One

Nuclear Localization of p38 MAPK in Response to DNA Damage

(2012) C. David Wood et al.   International Journal of Biological Sciences

A genome-wide association study of Alzheimer’s disease using random forests and enrichment analysis

(2012) Liang Zou et al.   Science China-Life Sciences

Predicting protein sumoylation sites from sequence features

(2011) Shaolei Teng et al.   AMINO ACIDS

Methods for investigation of targeted kinase inhibitor therapy using chemical proteomics and phosphorylation profiling

(2010) Bin Fang et al.   BIOCHEMICAL PHARMACOLOGY

Maximal conditional chi-square importance in random forests

(2010) Minghui Wang et al.   BIOINFORMATICS

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Sex Differences in the Phosphorylation of Mitochondrial Proteins Result in Reduced Production of Reactive Oxygen Species and Cardioprotection in Females

(2010) Claudia J. Lagranha et al.   CIRCULATION RESEARCH

Musite, a Tool for Global Prediction of General and Kinase-specific Phosphorylation Sites

(2010) Jianjiong Gao et al.   MOLECULAR & CELLULAR PROTEOMICS

Phospho.ELM: a database of phosphorylation sites--update 2011

(2010) H. Dinkel et al.   NUCLEIC ACIDS RESEARCH

Identifying Human Kinase-Specific Protein Phosphorylation Sites by Integrating Heterogeneous Information from Various Sources

(2010) Tingting Li et al.   PLoS One

Predicting sulfotyrosine sites using the random forest algorithm with significantly improved prediction accuracy

(2009) Zheng Yang   BMC BIOINFORMATICS

Willows: a memory efficient tree and forest construction package

(2009) Heping Zhang et al.   BMC BIOINFORMATICS

GPS 2.0, a Tool to Predict Kinase-specific Phosphorylation Sites in Hierarchy

(2008) Yu Xue et al.   MOLECULAR & CELLULAR PROTEOMICS