Reestablishment of Recipient-associated Microbiota in the Lung Allograft Is Linked to Reduced Risk of Bronchiolitis Obliterans Syndrome

Lung-enriched Organisms and Aberrant Bacterial and Fungal Respiratory Microbiota after Lung Transplant

(2012) Emily S. Charlson et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Ultrafast clustering algorithms for metagenomic sequence analysis

(2012) W. Li et al.   BRIEFINGS IN BIOINFORMATICS

Colonisation and infection of the paranasal sinuses in cystic fibrosis patients is accompanied by a reduced PMN response

(2012) Helle Krogh Johansen et al.   Journal of Cystic Fibrosis

68 Distinct Microbial Signatures of Healthy and Failing Lung Allografts

(2012) D. Willner et al.   JOURNAL OF HEART AND LUNG TRANSPLANTATION

The Registry of the International Society for Heart and Lung Transplantation: 29th Adult Lung and Heart-Lung Transplant Report—2012

(2012) Jason D. Christie et al.   JOURNAL OF HEART AND LUNG TRANSPLANTATION

The Airway Microbiota in Cystic Fibrosis: A Complex Fungal and Bacterial Community—Implications for Therapeutic Management

(2012) Laurence Delhaes et al.   PLoS One

Cystic Fibrosis-Niche Adaptation of Pseudomonas aeruginosa Reduces Virulence in Multiple Infection Hosts

(2012) Nicola Ivan Lorè et al.   PLoS One

Comparison of DNA Extraction Methods for Microbial Community Profiling with an Application to Pediatric Bronchoalveolar Lavage Samples

(2012) Dana Willner et al.   PLoS One

Assessing Bacterial Populations in the Lung by Replicate Analysis of Samples from the Upper and Lower Respiratory Tracts

(2012) Emily S. Charlson et al.   PLoS One

The Adult Cystic Fibrosis Airway Microbiota Is Stable over Time and Infection Type, and Highly Resilient to Antibiotic Treatment of Exacerbations

(2012) Anthony A. Fodor et al.   PLoS One

Interkingdom metabolic transformations captured by microbial imaging mass spectrometry

(2012) W. J. Moree et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Decade-long bacterial community dynamics in cystic fibrosis airways

(2012) J. Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Long-term cultivation-independent microbial diversity analysis demonstrates that bacterial communities infecting the adult cystic fibrosis lung show stability and resilience

(2012) Franziska Anne Stressmann et al.   THORAX

Topographical Continuity of Bacterial Populations in the Healthy Human Respiratory Tract

(2011) Emily S. Charlson et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Bile Acids Aspiration Reduces Survival in Lung Transplant Recipients with BOS Despite Azithromycin

(2011) V. Mertens et al.   AMERICAN JOURNAL OF TRANSPLANTATION

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Evolution and diversification of Pseudomonas aeruginosa in the paranasal sinuses of cystic fibrosis children have implications for chronic lung infection

(2011) Susse Kirkelund Hansen et al.   ISME Journal

Spatial distribution of microbial communities in the cystic fibrosis lung

(2011) Dana Willner et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

A review of bronchiolitis obliterans syndrome and therapeutic strategies

(2011) Don Hayes   Journal of Cardiothoracic Surgery

Sinonasal persistence of Pseudomonas aeruginosa after lung transplantation

(2011) J.G. Mainz et al.   Journal of Cystic Fibrosis

Lung transplantation: infection, inflammation, and the microbiome

(2011) Takeshi Nakajima et al.   Seminars in Immunopathology

Positive Signature-Tagged Mutagenesis in Pseudomonas aeruginosa: Tracking Patho-Adaptive Mutations Promoting Airways Chronic Infection

(2011) Irene Bianconi et al.   PLoS Pathogens

Impact of Oropharyngeal Dysphagia on Long-Term Outcomes of Lung Transplantation

(2010) B. Zane Atkins et al.   ANNALS OF THORACIC SURGERY

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

Phylogenetic and metabolic diversity of bacteria associated with cystic fibrosis

(2010) Adam M Guss et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

Pseudomonas aeruginosa Exploits Lipid A and Muropeptides Modification as a Strategy to Lower Innate Immunity during Cystic Fibrosis Lung Infection

(2009) Cristina Cigana et al.   PLoS One

Clinical spectrum of gram-positive infections in lung transplantation

(2009) M.R. Gupta et al.   Transplant Infectious Disease

Pseudomonas aeruginosa Colonization of the Allograft After Lung Transplantation and the Risk of Bronchiolitis Obliterans Syndrome

(2009) Phil Botha et al.   TRANSPLANTATION

Pseudomonal airway colonisation: risk factor for bronchiolitis obliterans syndrome after lung transplantation?

(2008) R. Vos et al.   EUROPEAN RESPIRATORY JOURNAL

Impact of graft colonization with gram-negative bacteria after lung transplantation on the development of bronchiolitis obliterans syndrome in recipients with cystic fibrosis

(2008) J. Gottlieb et al.   RESPIRATORY MEDICINE

Gastro-oesophageal reflux and gastric aspiration in lung transplant patients with or without chronic rejection

(2007) K. Blondeau et al.   EUROPEAN RESPIRATORY JOURNAL