Genome-wide transcriptome analysis identifies novel gene signatures implicated in human chronic liver disease

Human tetraspanin transmembrane 4 superfamily member 4 or intestinal and liver tetraspan membrane protein is overexpressed in hepatocellular carcinoma and accelerates tumor cell growth

(2012) Ying Li et al.   ACTA BIOCHIMICA ET BIOPHYSICA SINICA

Identification of the topology and functional domains of PAQR10

(2012) Ting Jin et al.   BIOCHEMICAL JOURNAL

Fibrosis-dependent mechanisms of hepatocarcinogenesis

(2012) David Y. Zhang et al.   HEPATOLOGY

Zinc-induced Dnmt1 expression involves antagonism between MTF-1 and nuclear receptor SHP

(2012) Y. Zhang et al.   NUCLEIC ACIDS RESEARCH

RNA-Sequencing Analysis of 5' Capped RNAs Identifies Many New Differentially Expressed Genes in Acute Hepatitis C Virus Infection

(2012) Neven Papic et al.   Viruses-Basel

Comparative analysis of algorithms for next-generation sequencing read alignment

(2011) M. Ruffalo et al.   BIOINFORMATICS

Microarrays, deep sequencing and the true measure of the transcriptome

(2011) John H Malone et al.   BMC BIOLOGY

CYP2A5 Induction and Hepatocellular Stress: An Adaptive Response to Perturbations of Heme Homeostasis

(2011) Gordon M. Kirby et al.   CURRENT DRUG METABOLISM

Nuclear receptor SHP inhibition of Dnmt1 expression via ERRγ

(2011) Yuxia Zhang et al.   FEBS LETTERS

Diurnal Regulation of the Early Growth Response 1 (Egr-1) Protein Expression by Hepatocyte Nuclear Factor 4α (HNF4α) and Small Heterodimer Partner (SHP) Cross-talk in Liver Fibrosis

(2011) Yuxia Zhang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

RNA-Seq Analyses Generate Comprehensive Transcriptomic Landscape and Reveal Complex Transcript Patterns in Hepatocellular Carcinoma

(2011) Qichao Huang et al.   PLoS One

Transcription factor Nrf2 regulates SHP and lipogenic gene expression in hepatic lipid metabolism

(2010) Jiansheng Huang et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Nonalcoholic Fatty Liver Disease: Pathology and Pathogenesis

(2010) Dina G. Tiniakos et al.   Annual Review of Pathology-Mechanisms of Disease

Role of nuclear receptor SHP in metabolism and cancer

(2010) Yuxia Zhang et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Identification of genes preferentially methylated in hepatitis C virus-related hepatocellular carcinoma

(2010) Ying-Bing Deng et al.   CANCER SCIENCE

Peptidoglycan Recognition Proteins Protect Mice from Experimental Colitis by Promoting Normal Gut Flora and Preventing Induction of Interferon-γ

(2010) Sukumar Saha et al.   Cell Host & Microbe

Diurnal Regulation of MTP and Plasma Triglyceride by CLOCK Is Mediated by SHP

(2010) Xiaoyue Pan et al.   Cell Metabolism

Nonalcoholic fatty liver disease and hepatocellular carcinoma: A weighty connection

(2010) Brad Q. Starley et al.   HEPATOLOGY

Review: Mammalian peptidoglycan recognition proteins (PGRPs) in innate immunity

(2010) Roman Dziarski et al.   Innate Immunity

Novel Polymorphisms of Nuclear Receptor SHP Associated with Functional and Structural Changes

(2010) Taofeng Zhou et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Serum levels of vaspin, obestatin, and apelin-36 in patients with nonalcoholic fatty liver disease

(2010) Bilge Aktas et al.   METABOLISM-CLINICAL AND EXPERIMENTAL

Nuclear Receptor SHP, a Death Receptor That Targets Mitochondria, Induces Apoptosis and Inhibits Tumor Growth

(2010) Y. Zhang et al.   MOLECULAR AND CELLULAR BIOLOGY

Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors

(2010) Andrew J Oler et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Role of Alcohol Metabolism in Non-Alcoholic Steatohepatitis

(2010) Susan S. Baker et al.   PLoS One

Distinct Regulation of Hepatitis B Virus Biosynthesis by Peroxisome Proliferator-Activated Receptor   Coactivator 1  and Small Heterodimer Partner in Human Hepatoma Cell Lines

(2009) C. R. Ondracek et al.   JOURNAL OF VIROLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks

(2008) David A Nix et al.   BMC BIOINFORMATICS

Dual-specificity MAP kinase phosphatases (MKPs) and cancer

(2008) Stephen M. Keyse   CANCER AND METASTASIS REVIEWS

FXR: a metabolic regulator and cell protector

(2008) Yan-Dong Wang et al.   CELL RESEARCH

Epigenetic Inhibition of Nuclear Receptor Small Heterodimer Partner Is Associated With and Regulates Hepatocellular Carcinoma Growth

(2008) Nan He et al.   GASTROENTEROLOGY

Loss of orphan receptor small heterodimer partner sensitizes mice to liver injury from obstructive cholestasis

(2008) Young Joo Park et al.   HEPATOLOGY

Ethanol and arachidonic acid synergize to activate Kupffer cells and modulate the fibrogenic response via tumor necrosis factor α, reduced glutathione, and transforming growth factor β-dependent mechanisms

(2008) Francisco Javier Cubero et al.   HEPATOLOGY

Orphan receptor small heterodimer partner suppresses tumorigenesis by modulating cyclin D1 expression and cellular proliferation

(2008) Yuxia Zhang et al.   HEPATOLOGY

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(2008) Marc Jeschke et al.   MOLECULAR MEDICINE

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Thrombospondin-1 expression correlates with angiogenesis in experimental cirrhosis

(2008) Gülsüm Özlem Elpek et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Enhancement of genotype 1 hepatitis C virus replication by bile acids through FXR

(2007) Caroline Scholtes et al.   JOURNAL OF HEPATOLOGY