Article
Chemistry, Analytical
Teliang Zhang, Xueliang Wang, Youjun Zeng, Songfeng Huang, Xiaoqi Dai, Weifu Kong, Qian Liu, Jiajie Chen, Junle Qu, Yonghong Shao
Summary: Surface plasmon resonance microscopy (SPRM) is widely used in biological fields for its high spatial resolution and label-free detection. In this study, a home-built SPRM system based on total internal reflection (TIR) was utilized to study the imaging of a single nanoparticle. By using a ring filter and deconvolution algorithm, the parabolic tail of the nanoparticle image was removed, achieving a spatial resolution of 248 nm. Additionally, specific binding between human IgG antigen and goat anti-human IgG antibody was successfully measured using TIR-based SPRM, demonstrating its capability in imaging sparse nanoparticles and monitoring biomolecular interactions.
Article
Chemistry, Analytical
Jiying Xu, Caixin Huang, Liangju Li, Ying Zhao, Zhenpeng Guo, Yi Chen, Pengfei Zhang
Summary: ESM technology allows for the measurement of ligand interactions with membrane proteins and analysis of cell adhesion properties and cell activity changes, providing a new method for studying cellular processes and drug screening.
Article
Biochemistry & Molecular Biology
Joerg Nikolaus, Kasey Hancock, Maria Tsemperouli, David Baddeley, Erdem Karatekin
Summary: Researchers used a polarization-controlled total internal reflection fluorescence (pTIRF) microscope to monitor the fusion of proteoliposomes with planar lipid bilayers, investigating membrane fusion pore dynamics. By varying excitation polarization angle, they identified a dye-dependent optimal polarization for maximal fluorescence increase upon fusion, aiding event detection and lipid transfer kinetics analysis.
FRONTIERS IN MOLECULAR BIOSCIENCES
(2021)
Article
Polymer Science
J. Alejandro Rivera-Moran, Peter R. Lang
Summary: This paper investigates the influence of noise effects, particle size, and sampling time on total internal reflection microscopy (TIRM) measurement results. It finds that detector shot noise and prolonged sampling times may cause erroneous results in steep parts of the interaction potential, while background noise has negligible effects. Noise does not significantly affect dynamic data, but lengthy sampling times and small probe particle radii can cause issues. Additionally, the study observes that dynamic results may differ from standard hydrodynamic predictions due to partial slip.
Article
Biochemistry & Molecular Biology
Maria Mernea, Roxana Stefania Ulareanu, Dana Cucu, Jasim Hafedh Al-Saedi, Cristian-Emilian Pop, Sergiu Fendrihan, Giorgiana Diana Carmen Anghelescu, Dan Florin Mihailescu
Summary: This study used THz spectroscopy to investigate the inhibition of ion channels and successfully distinguished between native and inhibited ENaC channels.
Article
Neurosciences
Miguel Salinas, Pascal Kessler, Dominique Douguet, Daad Sarraf, Nicolo Tonali, Robert Thai, Denis Servent, Eric Lingueglia
Summary: This study elucidated the inhibition mechanism of the snake venom toxin Mamb-1 on the acid-sensing ion channel ASIC1a through structure-activity relationship, molecular dynamics simulation, and experimental research. It provides important insights for further improvement and optimization of ASIC blockers.
Article
Biology
Kirin D. Gada, Jordie M. Kamuene, Takeharu Kawano, Leigh D. Plant
Summary: The cell surfaceome plays a crucial role in biology, but the identification and regulation of proteins on the cell membrane remains challenging. TIRFM is a precise and effective technique that helps to locate proteins on the cell membrane by limiting image depth and improving signal-to-noise ratio.
Review
Biochemistry & Molecular Biology
Cedric Vallee, Brendan Howlin, Rebecca Lewis
Summary: The Epithelial Sodium Channel/Degenerin (ENaC/DEG) family is a superfamily of sodium-selective channels with high homology in the pore region, playing important physiological roles in various animal species. The G/SxS selectivity filter and other conserved residues are crucial for ion selectivity, with different residues involved in ion permeability depending on the ion type. This review highlights new perspectives for further exploration of ion selectivity mechanisms.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Chemistry, Multidisciplinary
Anastasia Solomatina, Pavel S. Chelushkin, Shih-Hao Su, Cheng-Ham Wu, Pi-Tai Chou, Sergey P. Tunik
Summary: This study introduces a new strategy for double-parametric biosensing and presents a dual pH/O2 lifetime sensor, which allows for intracellular sensing of pH and O2 concentration with spatial and temporal resolution in living cells.
CHEMICAL COMMUNICATIONS
(2022)
Article
Computer Science, Information Systems
Idban Alamzadeh, Mohammadreza F. Imani
Summary: This article presents a reconfigurable reflective surface that can generate prescribed radiation patterns and perform compressive sensing. The surface can autonomously acquire information about incident and reflection directions and intelligently adapt its response. By incorporating hybrid elements and a compressive sensing scheme, the surface achieves low cost and complexity, as demonstrated through numerical simulations.
Article
Pharmacology & Pharmacy
Henry Danahay, Sarah Lilley, Kathryn Adley, Holly Charlton, Roy Fox, Martin Gosling
Summary: Niclosamide and benzbromarone have been considered as clinical candidates for the treatment of airway diseases due to their activity as inhibitors of the calcium activated chloride channel TMEM16A. However, this study reveals that both compounds have off-target effects and also questions the classification of niclosamide as a TMEM16A blocker. The study further suggests a potential role of TMEM16A in the regulation of epithelial ion transport and mucus secretion in the airway.
FRONTIERS IN PHARMACOLOGY
(2023)
Article
Neurosciences
Jing-Jing Liu, Katherine W. Eyring, Gabriele M. Koenig, Evi Kostenis, Richard W. Tsien
Summary: Oxytocin modulates ion channels in CA2 pyramidal neurons, increasing responsiveness to synaptic inputs and promoting rhythmic firing. These mechanisms deepen our understanding of oxytocin's role in promoting social memory and cognitive control.
JOURNAL OF NEUROSCIENCE
(2022)
Article
Chemistry, Physical
Jing Zeng, Wen Fan, Kangyu Jia, Shuhua Tu, Limin Wu
Summary: A novel retroreflective structural color film (RSCF) based on interference and total internal reflection (TIR) was reported. The film consists of a microscale polymer hemisphere array, displaying different colors under coaxial and noncoaxial illumination and observation. Additionally, an elastic polyurethane-based RSCF can exhibit dynamically changing colors during uniaxial tensile/compressive deformation.
JOURNAL OF COLLOID AND INTERFACE SCIENCE
(2021)
Article
Optics
Kevin Affannoukoue, Simon Labouesse, Guillaume Maire, Laurent Gallais, Julien Savatier, Marc Allain, Md Rasedujjaman, Loic Legoff, Jerome Idier, Renaud Poincloux, Florence Pelletier, Christophe Leterrier, Thomas Mangeat, Anne Sentenac
Summary: A benefit of random illumination microscopy (RIM) is that it improves the resolution and linearity of structured illumination microscopy using speckled illumination. In this study, RIM was implemented in the TIRF configuration for imaging biological processes close to the coverslip surface, achieving high-resolution images on fixed samples and dynamic images on live macrophages. The simplicity of the experimental setup and imaging protocol, as well as the robustness of the data processing, make TIRF-RIM a preferred method for super-resolution TIRF imaging.
Article
Chemistry, Analytical
Ernesta Buzavaite-Verteliene, Vincentas Maciulis, Justina Anulyte, Tomas Tolenis, Algirdas Baskys, Ieva Plikusiene, Zigmas Balevicius
Summary: In this study, a one-dimensional photonic crystal with an additional TiO2 layer, supporting Bloch surface waves (BSW), was used to enhance the signal sensitivity for protein interaction detection. The results showed that the BSW component of the photonic crystal sample with an additional TiO2 layer had higher sensitivity.
Article
Cell Biology
Wei Liu, Matjaz Stenovec, William Lee, Vedrana Montana, Marko Kreft, Robert Zorec, Vladimir Parpura
Summary: The interactive mechanical forces between individual SNARE proteins Sb2 and Sx1A are sufficient to mediate vesicle docking, suggesting that a trans binary Sx1A-Sb2 complex alone can play a crucial role in the cellular environment.
Article
Cell Biology
Marta Switalska, Beata Filip-Psurska, Magdalena Milczarek, Mateusz Psurski, Adrianna Moszynska, Aleksandra M. Dabrowska, Malgorzata Gawronska, Karol Krzyminski, Maciej Baginski, Rafal Bartoszewski, Joanna Wietrzyk
Summary: The combined treatment of C-1305 and PTX showed anticancer activity and improved tumor blood perfusion in in vivo studies. It resulted in increased level of CCL2 and decreased level of PDGF. Furthermore, the treatment modulated the levels of certain angiogenesis-related cytokines.
JOURNAL OF CELLULAR AND MOLECULAR MEDICINE
(2022)
Review
Oncology
Sylwia Bartoszewska, James F. Collawn, Rafal Bartoszewski
Summary: The complex signaling networks and tumor microenvironments make it difficult to understand cell survival regulation in cancer. This article discusses the role of intermittent hypoxia in inducing the unfolded protein response (UPR) in the tumor microenvironment, as well as its implications for cancer progression and treatment approaches.
Article
Cell Biology
Xiaolu Zhang, Alyssa Wolfinger, Xiaojun Wu, Rawan Alnafisah, Ali Imami, Abdul-rizaq Hamoud, Anna Lundh, Vladimir Parpura, Robert E. McCullumsmith, Rammohan Shukla, Sinead M. O'Donovan
Summary: This study uses gene enrichment analysis to investigate the relationships between different astrocyte subtypes, psychiatric disorders, and psychotropic medications. The study identifies the enrichment of astrocyte subtypes in psychiatric disorders, with the highest level of enrichment found in schizophrenia. The study also reveals the complex responses of astrocytes under pathological conditions. Furthermore, the study finds limited common gene enrichment between psychotropic medications and astrocyte subtypes, suggesting that astrocytes are not the primary target of these medications.
Article
Biochemistry & Molecular Biology
Maciej Jaskiewicz, Adrianna Moszynska, Jaroslaw Kroliczewski, Aleksandra Cabaj, Sylwia Bartoszewska, Agata Charzynska, Magda Gebert, Michal Dabrowski, James F. Collawn, Rafal Bartoszewski
Summary: HIF is a transcription factor that activates the adaptive hypoxic response during low oxygen levels. HIF-1 and HIF-2 mediate this response in a sequential manner, but their transcriptional profiles differ and the transition between them is not well understood.
CELLULAR & MOLECULAR BIOLOGY LETTERS
(2022)
Article
Biochemistry & Molecular Biology
Dzamila M. Boguskawska, Michal Skulski, Rafal Bartoszewski, Beata Machnicka, Elzbieta Heger, Kazimierz Kuliczkowski, Aleksander F. Sikorski
Summary: This study reports two cases of hemolytic anemia in brothers of Polish origin with a very rare mutation associated with pyrimidine 5'-nucleotidase deficiency. Molecular analysis, including whole-exome sequencing and Western blot, identified the mutated phenotype of pyrimidine 5'-nucleotidase in the brothers' erythrocytes.
CELLULAR & MOLECULAR BIOLOGY LETTERS
(2022)
Article
Genetics & Heredity
Maciej Jaskiewicz, Adrianna Moszynska, Magdalena Gebert, James F. Collawn, Rafal Bartoszewski
Summary: Cellular adaptation to hypoxia is regulated by hypoxia inducible factors HIF-1 and HIF-2. HIF-1 mediates acute hypoxia response, while HIF-2 allows adaptation to chronic oxygen deprivation. Transition from HIF-1 to HIF-2 during hypoxia is possible due to the low stability of HIF-1 alpha subunit transcript (HIF1A) and the stable mRNA of HIF-2 alpha (EPAS1). However, no microRNAs (miRNAs) have been found to regulate endothelial HIF-2 levels during hypoxia.
Review
Oncology
Sylwia Bartoszewska, Jakub Slawski, James F. F. Collawn, Rafal Bartoszewski
Summary: MicroRNAs (miRNAs) play a critical role in the regulation of mRNA stability and translation. Despite our knowledge, translating miRNAs into clinical applications has been problematic. Using hsa-miR-429 as an example, the limitations in the development of efficient miRNA-related therapies and diagnostic approaches are discussed. A literature analysis of the verified hsa-miR-429 targets in various human research models is provided, and a meta-analysis is suggested for better insights into the role of hsa-miR-429 in cancer diagnosis and therapeutic approaches.
Review
Biochemistry & Molecular Biology
Wojciech Bialek, James F. Collawn, Rafal Bartoszewski
Summary: This article discusses the role of ubiquitin-mediated protein destabilization in protein degradation, as well as the significance of the ubiquitin-independent pathway and 20S proteasome. It also explores the interaction between the ubiquitin-proteasome system and pathogenic microorganisms, and how these microorganisms manipulate the system to evade or counteract host responses.
Review
Cell Biology
Sylwia Bartoszewska, Jakub Slawski, James F. Collawn, Rafal Bartoszewski
Summary: The unfolded protein response (UPR) is a cellular mechanism that protects cells during stress conditions, and cancer cells exploit this pathway to avoid cell death. One specific pathway activated during UPR is the inositol-requiring enzyme 1a (IRE1) pathway, which is associated with cell fate decisions and has potential as a cancer therapeutic target. This article discusses different UPR signaling pathways and focuses on IRE1 inhibitors as a potential effective cancer treatment.
JOURNAL OF CELL COMMUNICATION AND SIGNALING
(2023)
Article
Cell Biology
Yang Liu, Xiao-Ran Wang, Yun-Hao Jiang, Tong Li, Shuo Ling, Hong-Yang Wang, Jia-Wei Yu, Shu-Wei Jia, Xiao-Yu Liu, Chun-Mei Hou, Vladimir Parpura, Yu-Feng Wang
Summary: The study investigated the interaction between astrocytic VRAC and AQP4 in SON, and found that their coordinated activities play a key role in the regulation of GFAP filament dynamics and the modulation of vasopressin neuronal activity.
Review
Biochemistry & Molecular Biology
Magdalena Gebert, Jakub Slawski, Leszek Kalinowski, James F. Collawn, Rafal Bartoszewski
Summary: Efficient brain function requires a significant amount of oxygen intake, which can lead to oxidative stress and neurodegenerative diseases. The regulation of oxygen homeostasis and redox balance in the brain is mediated by stress response pathways, including the unfolded protein response (UPR). Understanding the opposing roles of UPR signaling pathways could provide insights for preventing cognitive decline and treating neurodegenerative diseases.
Article
Oncology
Szymon Macioszek, Danuta Dudzik, Rafal Bartoszewski, Tomasz Stokowy, Diether Lambrechts, Bram Boeckx, Agnieszka Wozniak, Patrick Schoffski, Michal J. Markuszewski
Summary: In this study, integrative metabolomic and transcriptomic analyses were performed to investigate the impact of imatinib treatment on tumour biochemical processes. The results revealed differential metabolite and gene expression profiles, indicating changes in pruine and pyrinridine metabolism, butanoate metabolism, as well as alanine, aspartate, and glutamate metabolism. These findings provide insights into the mechanisms of imatinib's anti-tumour activity and suggest a potentially novel approach for enhancing its efficacy or re-sensitizing imatinib-resistant tumours.
TRANSLATIONAL ONCOLOGY
(2023)
Article
Cell Biology
Magdalena Gebert, Sylwia Bartoszewska, Lukasz Opalinski, James F. Collawn, Rafal Bartoszewski
Summary: IRE1 plays a role in miRNA regulation during ER stress. The presence of an IRE1 inhibitor significantly increases the levels of pre-miR-301a and pre-miR-106b. Additionally, miR-301a-3p targets the proapoptotic protein GADD45A. Target protection for miR-301a-3p during ER stress promotes cell death in airway epithelial cells.
CELL COMMUNICATION AND SIGNALING
(2023)
Article
Biology
Maciej Jaskiewicz, Adrianna Moszynska, Marcin Serocki, Jaroslaw Kroliczewski, Sylwia Bartoszewska, James F. Collawn, Rafal Bartoszewski
Summary: The adaptive response to hypoxia involves the accumulation of three transcription factors, HIF-1α, HIF-2α, and HIF-3α, which promote cell survival under low oxygen conditions. This study demonstrates that the HIF-3α2 isoform accumulates during late-stage hypoxia and induces the expression of the apoptosis-promoting gene DDIT4. Additionally, HIF-3α2 is expressed in multiple endothelial cell types.