4.7 Review

Canine behavioral genetics: Pointing out the phenotypes and herding up the genes

期刊

AMERICAN JOURNAL OF HUMAN GENETICS
卷 82, 期 1, 页码 10-18

出版社

CELL PRESS
DOI: 10.1016/j.ajhg.2007.12.001

关键词

-

资金

  1. NATIONAL HUMAN GENOME RESEARCH INSTITUTE [Z01HG200325, ZIAHG200325] Funding Source: NIH RePORTER
  2. Intramural NIH HHS Funding Source: Medline

向作者/读者索取更多资源

An astonishing amount of behavioral variation is captured within the more than 350 breeds of dog recognized worldwide. Inherent in observations of dog behavior is the notion that much of what is observed is breed specific and will persist, even in the absence of training or motivation. Thus, herding, pointing, tracking, hunting, and so forth are likely to be controlled, at least in part at the genetic level. Recent studies in canine genetics suggest teat small numbers of genes control major morphologic phenotypes. By extension, we hypothesize that at least some canine behaviors will also be controlled by small numbers of genes that can be readily mapped. In this review, we describe our current understanding of a representative subset of canine behaviors, as well as approaches for phenotyping, genome-wide scans, and data analysis. Finally, we discuss the applicability of studies of canine behavior to human genetics.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Urology & Nephrology

Two-stage Study of Familial Prostate Cancer by Whole-exome Sequencing and Custom Capture Identifies 10 Novel Genes Associated with the Risk of Prostate Cancer

Daniel J. Schaid, Shannon K. McDonnell, Liesel M. FitzGerald, Lissa DeRycke, Zachary Fogarty, Graham G. Giles, Robert J. MacInnis, Melissa C. Southey, Tu Nguyen-Dumont, Geraldine Cancel-Tassin, Oliver Cussenot, Alice S. Whittemore, Weiva Sieh, Nilah Monnier Ioannidis, Chih-Lin Hsieh, Janet L. Stanford, Johanna Schleutker, Cheryl D. Cropp, John Carpten, Josef Hoegel, Rosalind Eeles, Zsofia Kote-Jarai, Michael J. Ackerman, Christopher J. Klein, Diptasri Mandal, Kathleen A. Cooney, Joan E. Bailey-Wilson, Brian Helfand, William J. Catalona, Fredrick Wiklund, Shaun Riska, Saurabh Bahetti, Melissa C. Larson, Lisa Cannon Albright, Craig Teerlink, Jianfeng Xu, William Isaacs, Elaine A. Ostrander, Stephen N. Thibodeau

Summary: This study uses a two-stage design to identify new genetic variants associated with prostate cancer (PCa) in individuals with a family history of the disease or with a more aggressive form of PCa. The research detected 11 known genes associated with PCa and 10 novel genes, most of which are primarily linked to aggressive PCa risk.

EUROPEAN UROLOGY (2021)

Article Evolutionary Biology

Human-modified canids in human-modified landscapes: The evolutionary consequences of hybridization for grey wolves and free-ranging domestic dogs

Malgorzata Pilot, Andre E. Moura, Innokentiy M. Okhlopkov, Nikolay Mamaev, Ninna H. Manaseryan, Vahram Hayrapetyan, Natia Kopaliani, Elena Tsingarska, Abdulaziz N. Alagaili, Osama B. Mohammed, Elaine A. Ostrander, Wieslaw Bogdanowicz

Summary: The study reveals that introgressive hybridization between wolves and free-ranging domestic dogs can impact gene pools and phenotypic traits, with free-ranging domestic dogs being more influenced by wolf introgression. This introgression may provide an adaptive advantage to free-ranging domestic dogs, but is mainly driven by drift in wolves.

EVOLUTIONARY APPLICATIONS (2021)

Article Biochemistry & Molecular Biology

Best practices for analyzing imputed genotypes from low-pass sequencing in dogs

Reuben M. Buckley, Alex C. Harris, Guo-Dong Wang, D. Thad Whitaker, Ya-Ping Zhang, Elaine A. Ostrander

Summary: The study compared the accuracy and performance of low-pass whole genome sequencing and imputation in dogs, demonstrating that by optimizing a variant quality filtering strategy, the imputation error rate can be reduced and approximately 80% of imputed sites retained. For case-control GWAS, where small effect sizes were most impacted, guidelines for best practices in low-pass WGS-imputed genotypes in dogs were provided.

MAMMALIAN GENOME (2022)

Article Biochemistry & Molecular Biology

Pleistocene origins, western ghost lineages, and the emerging phylogeographic history of the red wolf and coyote

Benjamin N. Sacks, Kieren J. Mitchell, Cate B. Quinn, Lauren M. Hennelly, Mikkel-Holger S. Sinding, Mark J. Statham, Sophie Preckler-Quisquater, Steven R. Fain, Logan Kistler, Stevi L. Vanderzwan, Julie A. Meachen, Elaine A. Ostrander, Laurent A. F. Frantz

Summary: The study reveals that red wolves had a long history on the American continent, with more complex phylogenetic relationships with coyotes and grey wolves than previously thought. Red wolves have experienced extinction and survival in the past, predating European colonization, humans, and even coyotes in North America.

MOLECULAR ECOLOGY (2021)

Article Genetics & Heredity

Dog10K_Boxer_Tasha_1.0: A Long-Read Assembly of the Dog Reference Genome

Vidhya Jagannathan, Christophe Hitte, Jeffrey M. Kidd, Patrick Masterson, Terence D. Murphy, Sarah Emery, Brian Davis, Reuben M. Buckley, Yan-Hu Liu, Xiang-Quan Zhang, Tosso Leeb, Ya-Ping Zhang, Elaine A. Ostrander, Guo-Dong Wang

Summary: By utilizing long-read technologies, an improved highly contiguous genome assembly of Tasha has been created, increasing sequence contiguity, closing gaps, and improving gene annotation by identifying new protein-coding transcripts.
Article Oncology

Basal and Luminal Molecular Subtypes in Naturally-Occurring Canine Urothelial Carcinoma are Associated with Tumor Immune Signatures and Dog Breed

Breann C. Sommer, Deepika Dhawan, Audrey Ruple, Jose A. Ramos-Vara, Noah M. Hahn, Sagar M. Utturkar, Elaine A. Ostrander, Heidi G. Parker, Christopher M. Fulkerson, Michael O. Childress, Lindsey M. Fourez, Alexander W. Enstrom, Deborah W. Knapp

Summary: This study validated the canine InvUC model by investigating clinical and tumor characteristics associated with luminal and basal subtypes, showing that basal subtype tumors are associated with immune infiltration and cancer progression, while luminal subtype tumors are associated with high-risk breeds and less advanced clinical stage.

BLADDER CANCER (2021)

Article Biochemistry & Molecular Biology

Natural and human-driven selection of a single non-coding body size variant in ancient and modern canids

Jocelyn Plassais, Bridgett M. vonHoldt, Heidi G. Parker, Alberto Carmagnini, Nicolas Dubos, Ilenia Papa, Kevin Bevant, Thomas Derrien, Lauren M. Hennelly, D. Thad Whitaker, Alex C. Harris, Andrew N. Hogan, Heather J. Huson, Victor F. Zaibert, Anna Linderholm, James Haile, Thierry Fest, Bilal Habib, Benjamin N. Sacks, Norbert Benecke, Alan K. Outram, Mikhail Sablin, Mietje Germonpre, Greger Larson, Laurent Frantz, Elaine A. Ostrander

Summary: Domestic dogs display a 40-fold size difference between breeds, with body size being regulated by multiple genes. Insulin-like growth factor 1 (IGF1) is the main regulator, controlling approximately 15% of the body size variation. By analyzing genome sequences from different species, researchers identified a variant in an antisense long non-coding RNA (IGF1-AS) that interacts with the IGF1 gene, resulting in the dominance of derived mutation in modern wolves and large domestic breeds.

CURRENT BIOLOGY (2022)

Letter Oncology

Massively parallel sequencing in hereditary prostate cancer families reveals a rare risk variant in the DNA repair gene, RAD51C

James R. Marthick, Kelsie Raspin, Georgea R. Foley, Nicholas B. Blackburn, Annette Banks, Shaun Donovan, Roslyn C. Malley, Matthew A. Field, Janet L. Stanford, Elaine A. Ostrander, Liesel M. FitzGerald, Joanne L. Dickinson

EUROPEAN JOURNAL OF CANCER (2021)

Article Urology & Nephrology

A Rare Germline HOXB13 Variant Contributes to Risk of Prostate Cancer in Men of African Ancestry

Burcu F. Darst, Raymond Hughley, Aaron Pfennig, Ujani Hazra, Caoqi Fan, Peggy Wan, Xin Sheng, Lucy Xia, Caroline Andrews, Fei Chen, Sonja Berndt, Zsofia Kote-Jarai, Koveela Govindasami, Jeannette T. Bensen, Sue A. Ingles, Benjamin A. Rybicki, Barbara Nemesure, Esther M. John, Jay H. Fowke, Chad D. Huff, Sara S. Strom, William B. Isaacs, Jong Y. Park, Wei Zheng, Elaine A. Ostrander, Patrick C. Walsh, John Carpten, Thomas A. Sellers, Kosj Yamoah, Adam B. Murphy, Maureen Sanderson, Dana C. Crawford, Susan M. Gapstur, William S. Bush, Melinda C. Aldrich, Olivier Cussenot, Gyorgy Petrovics, Jennifer Cullen, Christine Neslund-Dudas, Rick A. Kittles, Jianfeng Xu, Mariana C. Stern, Anand P. Chokkalingam, Luc Multigner, Marie-Elise Parent, Florence Menegaux, Geraldine Cancel-Tassin, Adam S. Kibel, Eric A. Klein, Phyllis J. Goodman, Janet L. Stanford, Bettina F. Drake, Jennifer J. Hu, Peter E. Clark, Pascal Blanchet, Graham Casey, Anselm J. M. Hennis, Alexander Lubwama, Ian M. Thompson, Robin J. Leach, Susan M. Gundell, Loreall Pooler, James L. Mohler, Elizabeth T. H. Fontham, Gary J. Smith, Jack A. Taylor, Laurent Brureau, William J. Blot, Richard Biritwum, Evelyn Tay, Ann Truelove, Shelley Niwa, Yao Tettey, Rohit Varma, Roberta McKean-Cowdin, Mina Torres, Mohamed Jalloh, Serigne Magueye Gueye, Lamine Niang, Olufemi Ogunbiyi, Michael Oladimeji Idowu, Olufemi Popoola, Akindele O. Adebiyi, Oseremen Aisuodionoe-Shadrach, Maxwell Nwegbu, Ben Adusei, Sunny Mante, Afua Darkwa-Abrahams, Edward D. Yeboah, James E. Mensah, Andrew Anthony Adjei, Halimatou Diop, Michael B. Cook, Stephen J. Chanock, Stephen Watya, Rosalind A. Eeles, Charleston W. K. Chiang, Joseph Lachance, Timothy R. Rebbeck, David Conti, Christopher A. Haiman

Summary: A specific germline deletion variant in HOXB13 (X285K) was found to be associated with an increased risk of prostate cancer in men of West African ancestry. This variant was more strongly associated with aggressive and advanced disease. Understanding who carries this variant can inform prostate cancer screening in men of West African ancestry.

EUROPEAN UROLOGY (2022)

Article Evolutionary Biology

Genetic Origins of the Two Canis lupus familiaris (Dog) Freight Dog Populations

Muhammad Basil Ali, Dayna L. Dreger, Reuben M. Buckley, Shahid Mansoor, Qaiser M. Khan, Elaine A. Ostrander

Summary: This study conducted a detailed population analysis on the Mackenzie River Husky and the Chinook, two breeds of Arctic sled dogs. The results showed contributions from Alaskan Malamutes, modern Greenland sled dogs, German Shepherd dogs, and Collies to both populations. Several genomic regions with provocative genes and signatures of selection were identified.

JOURNAL OF HEREDITY (2022)

Article Biochemistry & Molecular Biology

The effects of age, sex, weight, and breed on canid methylomes

Liudmilla Rubbi, Haoxuan Zhang, Junxi Feng, Christopher He, Patrick Kurnia, Prashansa Ratan, Aakash Tammana, Sabina House, Michael Thompson, Colin Farrell, Sagi Snir, Daniel Stahler, Elaine A. Ostrander, Bridgett M. vonHoldt, Matteo Pellegrini

Summary: This article explores the dynamic nature of DNA methylomes and develops quantitative models to measure their changes in response to various factors. The study finds strong associations between DNA methylomes and age, as well as novel associations with sex, weight, and sterilization status. Additionally, genetics influences DNA methylomes, and several factors moderate the relationship between epigenetic ages and real ages.

EPIGENETICS (2022)

Article Multidisciplinary Sciences

DNA methylation clocks for dogs and humans

Steve Horvath, Ake T. Lu, Amin Haghani, Joseph A. Zoller, Caesar Z. Li, Andrea R. Lim, Robert T. Brooke, Ken Raj, Aitor Serres-Armero, Dayna L. Dreger, Andrew N. Hogan, Jocelyn Plassais, Elaine A. Ostrander

Summary: Epigenetic clocks are reliable and highly accurate biomarkers that can be applied to 93 domestic dog breeds and potentially to humans. They are used to estimate age, lifespan, and health status, contributing to research on antiaging treatments.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

Article Genetics & Heredity

Patagonian sheepdog: Genomic analyses trace the footprints of extinct UK herding dogs to South America

Natasha Barrios, Cesar Gonzalez-Lagos, Dayna L. Dreger, Heidi G. Parker, Guillermo Nourdin-Galindo, Andrew N. Hogan, Marcelo A. Gomez, Elaine A. Ostrander

Summary: This article discusses the development and genetic relationship of modern dog breeds, with a focus on the Patagonian sheepdog as a rare herding breed. The study finds that Patagonian sheepdogs are closely related to modern herding breeds from the United Kingdom.

PLOS GENETICS (2022)

Article Multidisciplinary Sciences

Darwinian genomics and diversity in the tree of life

Taylorlyn Stephan, Shawn M. Burgess, Hans Cheng, Charles G. Danko, Clare A. Gill, Erich D. Jarvis, Klaus-Peter Koepfli, James E. Koltes, Eric Lyons, Pamela Ronald, Oliver A. Ryder, Lynn M. Schriml, Pamela Soltis, Sue VandeWoude, Huaijun Zhou, Elaine A. Ostrander, Elinor K. Karlsson

Summary: Genomics research has primarily focused on humans and a limited number of species, resulting in a lack of understanding about the genomes of the majority of species. However, a broad view that encompasses the vast diversity of life is necessary to comprehend how genomes function and how genetic variation shapes phenotypes. Integrating comparative genomics with other fields is crucial for scientific discovery and the protection of ourselves and our world.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

Article Oncology

Rare Germline Variants in ATM Predispose to Prostate Cancer: A PRACTICAL Consortium Study

Questa Karlsson, Mark N. Brook, Tokhir Dadaev, Sarah Wakerell, Edward J. Saunders, Kenneth Muir, David E. Neal, Graham G. Giles, Robert J. MacInnis, Stephen N. Thibodeau, Shannon K. McDonnell, Lisa Cannon-Albright, Manuel R. Teixeira, Paula Paulo, Marta Cardoso, Chad Huff, Donghui Li, Yu Yao, Paul Scheet, Jennifer B. Permuth, Janet L. Stanford, James Y. Dai, Elaine A. Ostrander, Olivier Cussenot, Geraldine Cancel-Tassin, Josef Hoegel, Kathleen Herkommer, Johanna Schleutker, Teuvo L. J. Tammela, Venkat Rathinakannan, Csilla Sipeky, Fredrik Wiklund, Henrik Gronberg, Markus Aly, William B. Isaacs, Jo L. Dickinson, Liesel M. FitzGerald, Melvin L. K. Chua, Tu Nguyen-Dumont, Practical Consortium, Daniel J. Schaid, Melissa C. Southey, Rosalind A. Eeles, Zsofia Kote-Jarai

Summary: The study suggests that carriers of germline ATM mutations have an increased risk of prostate cancer, especially those with tier 1 variants. Additionally, patients diagnosed at a younger age tend to have higher frequencies of tier 1 variants.

EUROPEAN UROLOGY ONCOLOGY (2021)

暂无数据