标题
Data compression for sequencing data
作者
关键词
Reference Genome, Compression Ratio, Data Compression, Cloud Storage, Bloom Filter
出版物
Algorithms for Molecular Biology
Volume 8, Issue 1, Pages 25
出版商
Springer Nature
发表日期
2013-11-20
DOI
10.1186/1748-7188-8-25
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- The human genome contracts again
- (2013) Dmitri S. Pavlichin et al. BIOINFORMATICS
- Genome compression: a novel approach for large collections
- (2013) Sebastian Deorowicz et al. BIOINFORMATICS
- QualComp: a new lossy compressor for quality scores based on rate distortion theory
- (2013) Idoia Ochoa et al. BMC BIOINFORMATICS
- Compression of FASTQ and SAM Format Sequencing Data
- (2013) James K. Bonfield et al. PLoS One
- SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner
- (2013) Ruibang Luo et al. PLoS One
- CRAC: an integrated approach to the analysis of RNA-seq reads
- (2013) Nicolas Philippe et al. GENOME BIOLOGY
- After the gold rush
- (2013) Neil Hall GENOME BIOLOGY
- Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform
- (2012) A. J. Cox et al. BIOINFORMATICS
- Rapid identification of non-human sequences in high-throughput sequencing datasets
- (2012) Aparna Bhaduri et al. BIOINFORMATICS
- SCALCE: boosting sequence compression algorithms using locally consistent encoding
- (2012) Faraz Hach et al. BIOINFORMATICS
- SOAP3: ultra-fast GPU-based parallel alignment tool for short reads
- (2012) C.-M. Liu et al. BIOINFORMATICS
- Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly
- (2012) H. Li BIOINFORMATICS
- Readjoiner: a fast and memory efficient string graph-based sequence assembler
- (2012) Giorgio Gonnella et al. BMC BIOINFORMATICS
- Compressive genomics
- (2012) Po-Ru Loh et al. NATURE BIOTECHNOLOGY
- The GEM mapper: fast, accurate and versatile alignment by filtration
- (2012) Santiago Marco-Sola et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Prospects and limitations of full-text index structures in genome analysis
- (2012) M. Vyverman et al. NUCLEIC ACIDS RESEARCH
- NGC: lossless and lossy compression of aligned high-throughput sequencing data
- (2012) Niko Popitsch et al. NUCLEIC ACIDS RESEARCH
- Compression of next-generation sequencing reads aided by highly efficient de novo assembly
- (2012) Daniel C. Jones et al. NUCLEIC ACIDS RESEARCH
- Compression of DNA sequence reads in FASTQ format
- (2011) Sebastian Deorowicz et al. BIOINFORMATICS
- Succinct data structures for assembling large genomes
- (2011) Thomas C. Conway et al. BIOINFORMATICS
- Tabix: fast retrieval of sequence features from generic TAB-delimited files
- (2011) H. Li BIOINFORMATICS
- A genome alignment algorithm based on compression
- (2011) Minh Cao et al. BMC BIOINFORMATICS
- Efficient storage of high throughput DNA sequencing data using reference-based compression
- (2011) M. Hsi-Yang Fritz et al. GENOME RESEARCH
- Efficient de novo assembly of large genomes using compressed data structures
- (2011) J. T. Simpson et al. GENOME RESEARCH
- Compressing Genomic Sequence Fragments Using SlimGene
- (2011) Christos Kozanitis et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- How to apply de Bruijn graphs to genome assembly
- (2011) Phillip E C Compeau et al. NATURE BIOTECHNOLOGY
- A novel compression tool for efficient storage of genome resequencing data
- (2011) Congmao Wang et al. NUCLEIC ACIDS RESEARCH
- GReEn: a tool for efficient compression of genome resequencing data
- (2011) Armando J. Pinho et al. NUCLEIC ACIDS RESEARCH
- Hobbes: optimized gram-based methods for efficient read alignment
- (2011) Athena Ahmadi et al. NUCLEIC ACIDS RESEARCH
- On the Representability of Complete Genomes by Multiple Competing Finite-Context (Markov) Models
- (2011) Armando J. Pinho et al. PLoS One
- Improving Transmission Efficiency of Large Sequence Alignment/Map (SAM) Files
- (2011) Muhammad Nazmus Sakib et al. PLoS One
- On the Future of Genomic Data
- (2011) S. D. Kahn SCIENCE
- G-SQZ: compact encoding of genomic sequence and quality data
- (2010) W. Tembe et al. BIOINFORMATICS
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- Data structures and compression algorithms for high-throughput sequencing technologies
- (2010) Kenny Daily et al. BMC BIOINFORMATICS
- Assembly algorithms for next-generation sequencing data
- (2010) Jason R. Miller et al. GENOMICS
- Textual data compression in computational biology: a synopsis
- (2009) R. Giancarlo et al. BIOINFORMATICS
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- SOAP2: an improved ultrafast tool for short read alignment
- (2009) R. Li et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- ABySS: A parallel assembler for short read sequence data
- (2009) J. T. Simpson et al. GENOME RESEARCH
- Sequencing technologies — the next generation
- (2009) Michael L. Metzker NATURE REVIEWS GENETICS
- The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
- (2009) Peter J. A. Cock et al. NUCLEIC ACIDS RESEARCH
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Human genomes as email attachments
- (2008) Scott Christley et al. BIOINFORMATICS
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search