Molecular Evidence for Convergence and Parallelism in Evolution of Complex Brains of Cephalopod Molluscs: Insights from Visual Systems

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Distinct Roles of Arrestin 1 Protein in Photoreceptors duringDrosophilaDevelopment

(2014) Bih-Hwa Shieh et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Physiology of invertebrate oxytocin and vasopressin neuropeptides

(2013) Christian W. Gruber   EXPERIMENTAL PHYSIOLOGY

Expression Dynamics and Protein Localization of Rhabdomeric Opsins in Platynereis Larvae

(2013) Nadine Randel et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Analysis Tool Web Services from the EMBL-EBI

(2013) Hamish McWilliam et al.   NUCLEIC ACIDS RESEARCH

Loss of the six3/6 controlling pathways might have resulted in pinhole-eye evolution in Nautilus

(2013) Atsushi Ogura et al.   Scientific Reports

miR-124, miR-125b, let-7 and Vesicle Transport Proteins in Squid Lenses inL. pealei

(2012) Claudine L. Bitel et al.   CURRENT EYE RESEARCH

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Insights into bilaterian evolution from three spiralian genomes

(2012) Oleg Simakov et al.   NATURE

Cell fate determination in the vertebrate retina

(2012) Erin A. Bassett et al.   TRENDS IN NEUROSCIENCES

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Genetic mechanisms involved in the evolution of the cephalopod camera eye revealed by transcriptomic and developmental studies

(2011) Masa-aki Yoshida et al.   BMC EVOLUTIONARY BIOLOGY

Parallel evolution of Nitric Oxide signaling: Diversity of synthesis and memory pathways

(2011) Leonid et al.   Frontiers in Bioscience-Landmark

Evolution of angiogenesis

(2011) Ramon Munoz-Chapuli   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Arrestin in Ciliary Invertebrate Photoreceptors: Molecular Identification and Functional Analysis In Vivo

(2011) M. d. P. Gomez et al.   JOURNAL OF NEUROSCIENCE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Ciliary photoreceptors in the cerebral eyes of a protostome larva

(2011) Yale J Passamaneck et al.   EvoDevo

Evidence for distributed light sensing in the skin of cuttlefish, Sepia officinalis

(2010) L. M. Mathger et al.   Biology Letters

Molecular evolution of nitric oxide synthases in metazoans

(2010) C.M. González-Domenech et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Squid vascular endothelial growth factor receptor: a shared molecular signature in the convergent evolution of closed circulatory systems

(2010) Masa-aki Yoshida et al.   EVOLUTION & DEVELOPMENT

THE NUMBER AND SIZES OF NERVE CELLS IN OCTOPUS

(2010) J. Z. YOUNG   PROCEEDINGS OF THE ZOOLOGICAL SOCIETY OF LONDON

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Characterization of the neurohypophysial hormone gene loci in elephant shark and the Japanese lamprey: origin of the vertebrate neurohypophysial hormone genes

(2009) Pai-Chung Gwee et al.   BMC EVOLUTIONARY BIOLOGY

On the Independent Origins of Complex Brains and Neurons

(2009) Leonid L. Moroz   BRAIN BEHAVIOR AND EVOLUTION

Phototransduction Motifs and Variations

(2009) King-Wai Yau et al.   CELL

Evolution of vertebrate retinal photoreception

(2009) T. D. Lamb   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

On the origins of arrestin and rhodopsin

(2008) Carlos E Alvarez   BMC EVOLUTIONARY BIOLOGY