Article
Plant Sciences
Wenqiang Li, Ghana S. Challa, Ajay Gupta, Liping Gu, Yajun Wu, Wanlong Li
Summary: Waterlogging poses a threat to wheat production, but a wheat-sea wheatgrass amphiploid has been developed that exhibits strong tolerance to waterlogging and low nitrogen conditions. The study found that the amphiploid effectively adapts to waterlogging stress through enhanced nitrate assimilation and reduction, as well as accumulation of nitric oxide.
Article
Agronomy
Fugong Ding, Jingyang Tong, Rui Xu, Jing Chen, Xiaoting Xu, Muhammad Nadeem, Shuping Wang, Yingxin Zhang, Zhanwang Zhu, Fengju Wang, Zhengwu Fang, Yuanfeng Hao
Summary: Waterlogging is a growing threat to wheat production in high-rainfall areas. This study identified three quantitative trait loci (QTL) associated with waterlogging tolerance in wheat and developed markers for marker-assisted selection (MAS) to improve waterlogging tolerance. These findings are of great importance for enhancing waterlogging tolerance in wheat.
Article
Plant Sciences
Le Xu, Chenchen Zhao, Jiayin Pang, Yanan Niu, Huaqiong Liu, Wenying Zhang, Meixue Zhou
Summary: Waterlogging significantly impacts wheat growth and development by limiting oxygen availability in the root zone, which in turn negatively affects plant metabolism. The formation of adventitious roots and root cortical aerenchyma are important adaptive traits for plants to survive in waterlogged conditions, with certain genotypes showing promising potential for breeding waterlogging-tolerant wheat varieties.
FRONTIERS IN PLANT SCIENCE
(2022)
Article
Agronomy
Yanjun Zhang, Yongjiang Zhang, Guangya Liu, Shizhen Xu, Jianlong Dai, Weijiang Li, Zhenhuai Li, Dongmei Zhang, Cundong Li, Hezhong Dong
Summary: The study found that increasing NO concentrations in plant tissues through foliar application of SNP can alleviate waterlogging stress, ultimately reducing biological and lint yield loss.
FIELD CROPS RESEARCH
(2021)
Article
Plant Sciences
Mohammed M. Mira, Eman A. El-Khateeb, Mohamed S. Youssef, Katarzyna Ciacka, Kenny So, Robert W. Duncan, Robert D. Hill, Claudio Stasolla
Summary: Over-expression of phytoglobin can alleviate the degradation of the root apical meristem caused by waterlogging through changes in nitric oxide and auxin distribution at the root tip.
Article
Agronomy
Yanjun Zhang, Guangya Liu, Shizhen Xu, Jianlong Dai, Weijiang Li, Zhenhuai Li, Dongmei Zhang, Zhengpeng Cui, Cundong Li, Hezhong Dong
Summary: Foliar spraying of SNP increased NO concentration in waterlogged cotton plants, promoting compensatory growth and reducing yield loss.
FIELD CROPS RESEARCH
(2022)
Review
Agronomy
James De Castro, Robert D. Hill, Claudio Stasolla, Ana Badea
Summary: Barley is the most susceptible cereal species to excess moisture stress, with waterlogging-induced hypoxia causing major morphological, physiological, and metabolic changes. Recent studies have shown the involvement of phytoglobins in attenuating hypoxic stress under excessive moisture conditions.
Article
Plant Sciences
Nilanjan Chakraborty
Summary: Foliar application of salicylic acid (SA) can induce endogenous nitric oxide and reactive oxygen species, improving the innate immunity and growth of tomato plants against Fusarium oxysporum stress.
PLANT CELL REPORTS
(2021)
Article
Chemistry, Analytical
Tasnima Alam Asa, Young Jun Seo
Summary: In this study, we present a novel method for recognizing multiple genes using ligation-double transcription mediated fluorometric profiling. By combining this approach with a selective fluorophore probe-RNA hybridization/graphene oxide quenching system, we successfully identified potential multi-gene classifiers for diagnostic use. The system is efficient, with a total experimentation time of only 45 minutes, and offers high sensitivity and specificity for the detection of RNA viruses.
Article
Soil Science
Zhen Wu, Yubing Dong, Xi Zhang, Xintong Xu, Zhengqin Xiong
Summary: Biochar application to soil is a promising tool for sequestering carbon, ensuring food security, and mitigating greenhouse gases and emissions of nitrous oxide and nitric oxide. However, limited research has been conducted on the long-term and practical effects of repeatedly amending biochar to soil. A three-year field experiment showed that biochar application significantly decreased methane, nitrous oxide, and nitric oxide emissions without hindering crop yield or mitigation of other greenhouse gases and nitrogen oxides.
Article
Agronomy
Xiao Wang, Jiakun Ge, Mengting He, Qing Li, Jian Cai, Qin Zhou, Yingxin Zhong, Bernd Wollenweber, Dong Jiang
Summary: This review provides a comprehensive overview of the current knowledge on drought priming in wheat and its effects on plant physiology, biochemistry, and key molecular mechanisms involved in stress tolerance. The article also highlights the potential applications of drought priming in agriculture and the challenges associated with its implementation.
FIELD CROPS RESEARCH
(2023)
Article
Food Science & Technology
Daniel Plante, Julio Alexander Bran Barrera, Maude Lord, Irene Iugovaz, Neda Nasheri
Summary: A method for extracting viral RNA from raw oysters has been developed, showing high efficiency in removing RT-PCR inhibitors and reliably detecting viral contamination. The method outperformed the ISO 15216-1 method and showed comparable efficiency to Method E, with fewer steps and shorter hands-on time.
Article
Biochemistry & Molecular Biology
Matilde Calderoni, Maddalena Altare, Luca Mastracci, Federica Grillo, Laura Cornara, Aldo Pagano
Summary: This study demonstrates a method for qualitative identification of Peganum harmala seeds using optical and electron microscopy, as well as the development of a real-time qPCR test that can detect Peganum harmala DNA in quantities as low as less than 1 pg. In addition to species specificity and high sensitivity, this method accurately quantifies the presence of Peganum harmala seeds or seed parts in complex herbal mixtures, providing an indication of the danger level of the product.
Article
Plant Sciences
Zornitsa Katerova, Iskren Sergiev, Dessislava Todorova, Elena Shopova, Ljudmila Dimitrova, Liliana Brankova
Summary: Waterlogging impairs crop development and wheat is sensitive to it. Selective herbicide Serrate (Syngenta) did not affect wheat phenotype but waterlogging caused yellowing and wilting. The combination of herbicide and waterlogging increased stress markers and antioxidant activity in wheat compared to waterlogging alone.
Article
Plant Sciences
F. Qalavand, M. Nasr-Esfahani, J. Vatandoost, D. A. Azarm
Summary: In wheat, Bipolaris sorokiniana is an important pathogen causing global yield losses. This study screened 33 wheat genotypes and analyzed the expression of candidate defense genes and the activity of antioxidant enzymes. The results showed that resistant genotypes had upregulated defense genes and increased antioxidant enzyme activity. This research sheds light on the mechanisms of resistance in wheat cultivars and their simultaneous resistance to multiple diseases.
Article
Genetics & Heredity
Emre Ilhan, Ilker Buyuk, Behcet Inal
Article
Biochemistry & Molecular Biology
Ilker Buyuk, Emre Ilhan, Dilara Sener, Ata Umut Ozsoy, Sumer Aras
MOLECULAR BIOLOGY REPORTS
(2019)
Article
Biochemistry & Molecular Biology
Behcet Inal, Emre Ilhan, Ilker Buyuk, Serdar Altintas
JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY
(2020)
Article
Biochemistry & Molecular Biology
Arash Hosseinpour, Emre Ilhan, Guller Ozkan, Halil Ibrahim Ozturk, Kamil Haliloglu, Kagan Tolga Cinisli
Summary: Salt stress affects wheat by altering cytosine methylation and DNA damage levels, while plant growth promoting bacteria and copper oxide nanoparticles can mitigate these effects and improve genomic stability.
JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY
(2021)
Article
Biochemistry & Molecular Biology
Faruk Karahan, Ahmet Ilcim, Aras Turkoglu, Emre Ilhan, Kamil Haliloglu
Summary: The phylogenetic relationship among Adonis taxa collected from Turkiye was evaluated using nrDNA ITS markers. The results showed that the phylogenetic classification of Adonis taxa largely depended on morphological structure, and the ITS markers were efficient in uncovering the genetic diversity of these species.
MOLECULAR BIOLOGY REPORTS
(2022)
Article
Biochemical Research Methods
Ahmed Sidar Aygoren, Ebru Gunes, Selman Muslu, Ayse Gul Kasapoglu, Esma Yigider, Murat Aydin, Ilker Buyuk, Emre Ilhan
Summary: This study conducted a genome-wide analysis and in silico characterization of the SABATH gene family in Phaseolus vulgaris. It discovered 18 Pvul-SABATH proteins and examined their reactions to salt and drought stress, as well as their expression patterns when melatonin is added. The findings provide insights into the role of Pvul-SABATH genes in plant growth and development under various stresses.
PLANT MOLECULAR BIOLOGY REPORTER
(2023)
Article
Biochemical Research Methods
Selman Muslu, Ayse Gul Kasapoglu, Ebru Gunes, Ahmed Sidar Aygoren, Esma Yigider, Emre Ilhan, Murat Aydin
Summary: This study investigates the GST gene family in Phaseolus vulgaris and identifies 55 Pv-GST proteins. The expression profiles of Pv-GST genes in leaf tissue of common bean under drought and salinity stress were determined using RNAseq data. qRT-PCR experiments showed that the expression levels of GST genes in common bean decreased under drought and salt stress, while melatonin treatment increased these expression levels.
PLANT MOLECULAR BIOLOGY REPORTER
(2023)
Article
Plant Sciences
Akgul Rakhimzhanova, Ayse Gul Kasapoglu, Aigul Sapakova, Emre Ilhan, Raushan Zharmukhametova, Murat Turan, Laila Zekenova, Selman Muslu, Laura Kazhygeldiyeva, Murat Aydin, Abdulkadir Ciltas
Summary: Cysteine-rich polycomb-like protein (CPP) transcription factors play a significant role in response to abiotic stresses and regulation of cell division and development in plants. This study identified and characterized the CPP genes in the Phaseolus vulgaris genome and investigated their expression patterns under stress and melatonin treatment. The findings provide a foundation for future functional genomics research on CPP genes in beans.
SOUTH AFRICAN JOURNAL OF BOTANY
(2023)
Article
Agriculture, Multidisciplinary
Emre Ilhan, Ayse Gul Kasapoglu, Selman Muslu, Ahmed Sidar Aygoren, Murat Aydin
Summary: In this study, the TCP transcription gene family in eucalyptus was bioinformatically investigated, and 16 TCP genes were found. The genes were classified into different clades and some gene duplications were discovered. The expression profiles of these genes in different tissues of eucalyptus were also analyzed. This study contributes to our understanding of the molecular basis of the TCP gene family in eucalyptus.
JOURNAL OF AGRICULTURAL SCIENCES-TARIM BILIMLERI DERGISI
(2023)
Article
Multidisciplinary Sciences
Emre Ilhan, Ayse Gul Kasapoglu, Aras Turkoglu, Ahmed Sidar Aygoren, Selman Muslu, Murat Aydin, Muhammed Aldaif, Kamil Haliloglu
Summary: In this study, the effects of NaN3 mutagenesis on quinoa plants were investigated. The results showed that NaN3 treatments had significant effects on genetic variations and germination parameters. These findings provide new insights for molecular breeding programs to improve quinoa genotypes and produce better varieties.
IRANIAN JOURNAL OF SCIENCE
(2023)
Article
Agriculture, Multidisciplinary
Huseyin Gungor, Emre Ilhan, Ayse Gul Kasapoglu, Ertugrul Filiz, Arash Hossein-Pour, Dragomir Valchev, Darina Valcheva, Kamil Haliloglu, Ziya Dumlupinar
Summary: This study evaluates the population structure and genetic diversity of barley cultivars in Turkey and Bulgaria using iPBS and SCoT markers. The results demonstrate that these markers are effective for assessing genetic diversity and population structure in barley.
JOURNAL OF AGRICULTURAL SCIENCES-TARIM BILIMLERI DERGISI
(2022)
Article
Plant Sciences
Ilker Buyuk, Aybuke Okay, Marta Gorska, Emre Ilhan, Emine Sumer Aras
Summary: In this study, 23 GASA genes were identified in common bean, with detailed bioinformatics analyses showing their association with stress and hormone signaling pathways. Some stress-related miRNAs were found to target Pvul-GASA genes, which play a role in salt stress response. The expression patterns of certain Pvul-GASA genes between control and salt-stressed common bean cultivars indicate their potential involvement in stress response.
TURKISH JOURNAL OF BOTANY
(2021)
Article
Plant Sciences
Arash Hossein-Pour, Faruk Karahan, Emre Ilhan, Ahmet Ilcim, Kamil Haliloglu
TURKISH JOURNAL OF BOTANY
(2019)
Article
Environmental Sciences
Emre Ilhan, Sevda Ozgur, Gulsemin Savas Tuna, Abdil Hakan Eren, Faruk Karahan, Metin Tuna, Mustafa Erayman
FRESENIUS ENVIRONMENTAL BULLETIN
(2017)
Article
Ecology
E. Ilhan
APPLIED ECOLOGY AND ENVIRONMENTAL RESEARCH
(2018)