Experimental evidence for rapid genomic adaptation to a new niche in an adaptive radiation

Contemporary evolution of a Lepidopteran species, Heliothis virescens , in response to modern agricultural practices

(2017) Megan L. Fritz et al.   MOLECULAR ECOLOGY

Ancient hybridization fuels rapid cichlid fish adaptive radiations

(2017) Joana I. Meier et al.   Nature Communications

Convergent evolution of SWS2 opsin facilitates adaptive radiation of threespine stickleback into different light environments

(2017) David A. Marques et al.   PLOS BIOLOGY

Erratum: Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation

(2016) C Schlötterer et al.   HEREDITY

Rapid genome-wide evolution in Brassica rapa populations following drought revealed by sequencing of ancestral and descendant gene pools

(2016) Steven J. Franks et al.   MOLECULAR ECOLOGY

High-throughput discovery of novel developmental phenotypes

(2016) Mary E. Dickinson et al.   NATURE

Mouse Genome Database (MGD)-2017: community knowledge resource for the laboratory mouse

(2016) Judith A. Blake et al.   NUCLEIC ACIDS RESEARCH

The genetic and molecular architecture of phenotypic diversity in sticklebacks

(2016) Catherine L. Peichel et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Rapid adaptive evolution of colour vision in the threespine stickleback radiation

(2016) Diana J. Rennison et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A beak size locus in Darwins finches facilitated character displacement during a drought

(2016) S. Lamichhaney et al.   SCIENCE

The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish

(2016) N. M. Reid et al.   SCIENCE

Population genomics of natural and experimental populations of guppies (Poecilia reticulata)

(2015) Bonnie A. Fraser et al.   MOLECULAR ECOLOGY

Evaluating genomic divergence and parallelism in replicate ecomorphs from young and old cichlid adaptive radiations

(2015) Matthew D. McGee et al.   MOLECULAR ECOLOGY

Evolution of Darwin’s finches and their beaks revealed by genome sequencing

(2015) Sangeet Lamichhaney et al.   NATURE

Evolution of stickleback in 50 years on earthquake-uplifted islands

(2015) Emily A. Lescak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome Assembly Improvement and Mapping Convergently Evolved Skeletal Traits in Sticklebacks with Genotyping-by-Sequencing

(2015) Andrew M. Glazer et al.   G3-Genes Genomes Genetics

Recent Selective Sweeps in North American Drosophila melanogaster Show Signatures of Soft Sweeps

(2015) Nandita R. Garud et al.   PLoS Genetics

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Modular Skeletal Evolution in Sticklebacks Is Controlled by Additive and Clustered Quantitative Trait Loci

(2014) Craig T. Miller et al.   GENETICS

selscan: An Efficient Multithreaded Program to Perform EHH-Based Scans for Positive Selection

(2014) Z. A. Szpiech et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease

(2014) Mary Shimoyama et al.   NUCLEIC ACIDS RESEARCH

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Correction: Ago1 Interacts with RNA Polymerase II and Binds to the Promoters of Actively Transcribed Genes in Human Cancer Cells

(2014) Vera Huang et al.   PLoS Genetics

Fast Evolution from Precast Bricks: Genomics of Young Freshwater Populations of Threespine Stickleback Gasterosteus aculeatus

(2014) Nadezhda V. Terekhanova et al.   PLoS Genetics

Haplotype Estimation Using Sequencing Reads

(2013) Olivier Delaneau et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genetic and Neural Modularity Underlie the Evolution of Schooling Behavior in Threespine Sticklebacks

(2013) Anna K. Greenwood et al.   CURRENT BIOLOGY

Quantifying Population Genetic Differentiation from Next-Generation Sequencing Data

(2013) Matteo Fumagalli et al.   GENETICS

Estimating and interpreting FST: The impact of rare variants

(2013) G. Bhatia et al.   GENOME RESEARCH

Role of the iridescent eye in stickleback female mate choice

(2013) I. N. Flamarique et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Massive Habitat-Specific Genomic Response in D. melanogaster Populations during Experimental Evolution in Hot and Cold Environments

(2013) Ray Tobler et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeography and adaptation genetics of stickleback from the Haida Gwaii archipelago revealed using genome-wide single nucleotide polymorphism genotyping

(2013) Bruce E. Deagle et al.   MOLECULAR ECOLOGY

Genetic Architecture of Variation in the Lateral Line Sensory System of Threespine Sticklebacks

(2013) Abigail R. Wark et al.   G3-Genes Genomes Genetics

Interactions with Iridophores and the Tissue Environment Required for Patterning Melanophores and Xanthophores during Zebrafish Adult Pigment Stripe Formation

(2013) Larissa B. Patterson et al.   PLoS Genetics

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Twenty years of body shape evolution in a threespine stickleback population adapting to a lake environment

(2012) WINDSOR E. AGUIRRE et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Abrupt changes in defence and trophic morphology of the giant threespine stickleback (Gasterosteussp.) following colonization of a vacant habitat

(2012) Stephen D. Leaver et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Admixture mapping of male nuptial colour and body shape in a recently formed hybrid population of threespine stickleback

(2012) TIFFANY B. MALEK et al.   MOLECULAR ECOLOGY

Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes

(2012) I. Keller et al.   MOLECULAR ECOLOGY

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

(2012) Kanchon K. Dasmahapatra et al.   NATURE

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics

(2012) Douglas G. Howe et al.   NUCLEIC ACIDS RESEARCH

Estimates of Genetic Differentiation Measured by FST Do Not Necessarily Require Large Sample Sizes When Using Many SNP Markers

(2012) Eva-Maria Willing et al.   PLoS One

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Adaptive phenotypic plasticity in the Midas cichlid fish pharyngeal jaw and its relevance in adaptive radiation

(2011) Moritz Muschick et al.   BMC EVOLUTIONARY BIOLOGY

Intrinsic phototransduction persists in melanopsin-expressing ganglion cells lacking diacylglycerol-sensitive TRPC subunits

(2011) Claudio E. Perez-Leighton et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

Opsin gene duplication and divergence in ray-finned fish

(2011) Diana J. Rennison et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Population genomics of parallel phenotypic evolution in stickleback across stream-lake ecological transitions

(2011) B. E. Deagle et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Industrial Melanism in British Peppered Moths Has a Singular and Recent Mutational Origin

(2011) A. E. van't Hof et al.   SCIENCE

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Genome-wide analysis of a long-term evolution experiment with Drosophila

(2010) Molly K. Burke et al.   NATURE

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Isolation of ON Bipolar Cell Genes via hrGFP-coupled Cell Enrichment Using the mGluR6 Promoter

(2009) Yoshiaki Nakajima et al.   JOURNAL OF BIOCHEMISTRY

colgate/hdac1 repression of foxd3 expression is required to permit mitfa-dependent melanogenesis

(2007) Myron S. Ignatius et al.   DEVELOPMENTAL BIOLOGY

Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions

(2007) K. M. DLUGOSCH et al.   MOLECULAR ECOLOGY

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION