4.4 Article

Identification and functional annotation of metabolism-associated lncRNAs and their related protein-coding genes in gastric cancer

期刊

MOLECULAR GENETICS & GENOMIC MEDICINE
卷 6, 期 5, 页码 728-738

出版社

WILEY
DOI: 10.1002/mgg3.427

关键词

coexpression network; long noncoding RNA; metabolism; NDUFB6; TOPORS-AS1

资金

  1. Applied Research Project on Nonprofit Technology of Zhejiang Province [2016C33177]
  2. Scientific Innovation Team Project of Ningbo [2017C110019]
  3. K. C. Wong Magna Fund in Ningbo University

向作者/读者索取更多资源

BackgroundLong noncoding RNAs (lncRNAs) play important roles in carcinogenesis. However, the roles of metabolism-associated lncRNAs in cancers are still unclear. MethodsA microarray of metabolism-associated lncRNAs was used to detect their expression patterns between gastric cancer and paired nontumorous tissues. Its results and gastric cancer differential gene expression data from public databases were used to screen the metabolic pathway-associated lncRNAs. A metabolic network with microRNAs (miRNAs), lncRNAs, and protein-coding genes was further constructed. Finally, the expression of TOPORS antisense RNA 1 (TOPORS-AS1), a screened highly expressed lncRNA and its associated protein-coding gene, NADH: ubiquinone oxidoreductase subunit B6 (NDUFB6), were verified by reverse transcription polymerase chain reaction. ResultsA total of eight upregulated and one downregulated lncRNAs and 25 upregulated and 20 downregulated protein-coding genes were found to be involved in metabolism in gastric cancer. Within the lncRNAs-miRNAs-mRNAs metabolic network, 78 miRNA-target links, 546 positive coexpression relationships, and 191 protein-protein interactions were found. The expression of TOPORS-AS1 and its associated gene, NDUFB6 in gastric cancer tissues was significantly lower than that in adjacent nontumor tissues. Moreover, NDUFB6 expression was associated with the invasion and distal metastasis of gastric cancer. ConclusionsThe metabolism-associated lncRNAs play important roles in the occurrence of gastric cancer.

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