Accuracy of Genomic Evaluations of Juvenile Growth Rate in Common Carp (Cyprinus carpio) Using Genotyping by Sequencing

Genomic Predictions and Genome-Wide Association Study of Resistance Against Piscirickettsia salmonis in Coho Salmon ( Oncorhynchus kisutch ) Using ddRAD Sequencing

(2018) Agustín Barría et al.   G3-Genes Genomes Genetics

Genomic prediction unifies animal and plant breeding programs to form platforms for biological discovery

(2017) John M Hickey et al.   NATURE GENETICS

Applications of genotyping by sequencing in aquaculture breeding and genetics

(2017) Diego Robledo et al.   Reviews in Aquaculture

Genotype Imputation To Improve the Cost-Efficiency of Genomic Selection in Farmed Atlantic Salmon

(2017) Hsin-Yuan Tsai et al.   G3-Genes Genomes Genetics

QTL variations for growth-related traits in eight distinct families of common carp (Cyprinus carpio)

(2016) Weihua Lv et al.   BMC GENETICS

An ultra-high density linkage map and QTL mapping for sex and growth-related traits of common carp (Cyprinus carpio)

(2016) Wenzhu Peng et al.   Scientific Reports

Genomic Prediction of Resistance to Pasteurellosis in Gilthead Sea Bream (Sparus aurata) Using 2b-RAD Sequencing

(2016) C. Palaiokostas et al.   G3-Genes Genomes Genetics

Evaluation of Genome-Enabled Selection for Bacterial Cold Water Disease Resistance Using Progeny Performance Data in Rainbow Trout: Insights on Genotyping Methods and Genomic Prediction Models

(2016) Roger L. Vallejo et al.   Frontiers in Genetics

Genetic evaluation of a selective breeding program for common carp Cyprinus carpio conducted from 2004 to 2014

(2015) Zaijie Dong et al.   BMC GENETICS

Genome wide association and genomic prediction for growth traits in juvenile farmed Atlantic salmon using a high density SNP array

(2015) Hsin-Yuan Tsai et al.   BMC GENOMICS

Detection and Validation of QTL Affecting Bacterial Cold Water Disease Resistance in Rainbow Trout Using Restriction-Site Associated DNA Sequencing

(2015) Yniv Palti et al.   PLoS One

hsphase: an R package for pedigree reconstruction, detection of recombination events, phasing and imputation of half-sib family groups

(2014) Mohammad H Ferdosi et al.   BMC BIOINFORMATICS

A new approach for efficient genotype imputation using information from relatives

(2014) Mehdi Sargolzaei et al.   BMC GENOMICS

Genome sequence and genetic diversity of the common carp, Cyprinus carpio

(2014) Peng Xu et al.   NATURE GENETICS

Association Mapping of Disease Resistance Traits in Rainbow Trout Using Restriction Site Associated DNA Sequencing

(2014) Nathan R. Campbell et al.   G3-Genes Genomes Genetics

Parentage assignment with genomic markers: a major advance for understanding and exploiting genetic variation of quantitative traits in farmed aquatic animals

(2014) Marc Vandeputte et al.   Frontiers in Genetics

Genomic prediction in an admixed population of Atlantic salmon (Salmo salar)

(2014) Jørgen ØdegÃ¥rd et al.   Frontiers in Genetics

A comparison of communal and separate rearing of families in selective breeding of common carp (Cyprinus carpio): Responses to selection

(2013) Nguyen Huu Ninh et al.   AQUACULTURE

Lep-MAP: fast and accurate linkage map construction for large SNP datasets

(2013) Pasi Rastas et al.   BIOINFORMATICS

Accelerating Improvement of Livestock with Genomic Selection

(2013) Theo Meuwissen et al.   Annual Review of Animal Biosciences

Characterisation of QTL-linked and genome-wide restriction site-associated DNA (RAD) markers in farmed Atlantic salmon

(2012) Ross D Houston et al.   BMC GENOMICS

Whole-Genome Regression and Prediction Methods Applied to Plant and Animal Breeding

(2012) G. de los Campos et al.   GENETICS

Genomic Prediction in Animals and Plants: Simulation of Data, Validation, Reporting, and Benchmarking

(2012) H. D. Daetwyler et al.   GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Efficient computation of the genomic relationship matrix and other matrices used in single-step evaluation

(2011) I. Aguilar et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Linkage Mapping and Comparative Genomics Using Next-Generation RAD Sequencing of a Non-Model Organism

(2011) Simon W. Baxter et al.   PLoS One

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Genetic analysis of common carp (Cyprinus carpio) strains

(2010) Hanne Marie Nielsen et al.   AQUACULTURE

Confirmation and fine-mapping of a major QTL for resistance to infectious pancreatic necrosis in Atlantic salmon (Salmo salar): population-level associations between markers and trait

(2009) Thomas Moen et al.   BMC GENOMICS

Mapping genes for complex traits in domestic animals and their use in breeding programmes

(2009) Michael E. Goddard et al.   NATURE REVIEWS GENETICS

Genetic variation for growth at one and two summers of age in the common carp (Cyprinus carpio L.): Heritability estimates and response to selection

(2008) Marc Vandeputte et al.   AQUACULTURE

Major Quantitative Trait Loci Affect Resistance to Infectious Pancreatic Necrosis in Atlantic Salmon (Salmo salar)

(2008) R. D. Houston et al.   GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One