ImmPort, toward repurposing of open access immunological assay data for translational and clinical research

Open Access Platforms for Sharing Clinical Trial Data

(2016) Joseph S. Ross et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Protein Ontology (PRO): enhancing and scaling up the representation of protein entities

(2016) Darren A. Natale et al.   NUCLEIC ACIDS RESEARCH

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

(2016) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

Statistical inference of a convergent antibody repertoire response to influenza vaccine

(2016) Nicolas B. Strauli et al.   Genome Medicine

FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data

(2015) Sofie Van Gassen et al.   CYTOMETRY PART A

Integrated, Multi-cohort Analysis Identifies Conserved Transcriptional Signatures across Multiple Respiratory Viruses

(2015) Marta Andres-Terre et al.   IMMUNITY

Thinking Outside the Gate: Single-Cell Assessments in Multiple Dimensions

(2015) Pia Kvistborg et al.   IMMUNITY

Reanalysis of the Rituximab in ANCA-Associated Vasculitis trial identifies granulocyte subsets as a novel early marker of successful treatment

(2015) Mazen Nasrallah et al.   ARTHRITIS RESEARCH & THERAPY

ImmPort: disseminating data to the public for the future of immunology

(2014) Sanchita Bhattacharya et al.   IMMUNOLOGIC RESEARCH

Reanalyses of Randomized Clinical Trial Data

(2014) Shanil Ebrahim et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Toward effective sharing of high-dimensional immunology data

(2014) Berend Snijder et al.   NATURE BIOTECHNOLOGY

Molecular signatures of antibody responses derived from a systems biology study of five human vaccines

(2013) Shuzhao Li et al.   NATURE IMMUNOLOGY

Protein Ontology: a controlled structured network of protein entities

(2013) Darren A. Natale et al.   NUCLEIC ACIDS RESEARCH

NCBI’s Database of Genotypes and Phenotypes: dbGaP

(2013) Kimberly A. Tryka et al.   NUCLEIC ACIDS RESEARCH

High-Resolution Temporal Response Patterns to Influenza Vaccine Reveal a Distinct Human Plasma Cell Gene Signature

(2013) Alicia D. Henn et al.   Scientific Reports

Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses

(2012) Yu Lin et al.   Journal of Biomedical Semantics

Logical Development of the Cell Ontology

(2011) Terrence F Meehan et al.   BMC BIOINFORMATICS

Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data

(2010) Yu Qian et al.   CYTOMETRY PART B-CLINICAL CYTOMETRY

The Sequence Read Archive

(2010) R. Leinonen et al.   NUCLEIC ACIDS RESEARCH