4.7 Article

Protein and cell wall polysaccharide carbonyl determination by a neutral pH 2,4-dinitrophenylhydrazine-based photometric assay

期刊

REDOX BIOLOGY
卷 17, 期 -, 页码 128-142

出版社

ELSEVIER SCIENCE BV
DOI: 10.1016/j.redox.2018.04.010

关键词

Photometric method; 2,4-dinitrophenylhydrazine; Protein carbonyls; Cell wall polysaccharide carbonyls; Oxidative stress; DNA interference; Protein fractionation

资金

  1. Greek Ministry of Education
  2. project INVALOR: Research Infrastructure for Waste Valorization and Sustainable Management - Operational Programme Competitiveness, Entrepreneurship and Innovation (NSRF 2014-2020) [MIS 5002495]
  3. European Union (European Regional Development Fund)

向作者/读者索取更多资源

A new 2,4-dinitrophenylhydrazine (DNPH)-based photometric assay is developed for the quantification of carbonyls in protein samples from any biological source by protein carbonyl-DNPH hydrazone formation at acidic pH in the presence of denaturing urea, and subsequent hydrazone solubilization in the presence of SDS and stabilization from acid hydrolysis at pH 7.0. At this neutral (ntr) pH, interfering unreacted DNPH is uncharged and its thus increased hydrophobicity permits its 100% effective removal from the solubilizate with ethyl acetate/hexane wash. The ntrDNPH assay is more reliable and sensitive than the standard (std) DNPH photometric assay because it eliminates its main limitations: (i) interfering unreacted DNPH (pKa 1.55) that is nonspecifically bound to the TCA (pKa 0.7)-protein pellet is not effectively removed after wash with EtOH: ethyl acetate because it is positively charged, (ii) acid (TCA-induced) hydrolysis of the protein carbonyl-DNPH hydrazone, (iii) sample protein concentration re-determination, (iv) loss of sample acid (TCA)-soluble proteins, (v) DNA interference, and (vi) requires high protein quantity samples (>= 1 mg). Considering ntrDNPH assay's very low protein limit (1 mu g), its cumulative and functional sensitivities are 2600- and 2000-fold higher than those of the stdDNPH assay, respectively. The present study elucidates the DNA interference mechanism on the stdDNPH assay, and also develops a standardized protocol for sample protein treatment and fractionation (into cytoplasmic/aqueous, membrane/lipid-bound, and histone/DNA-bound proteins; see Supplement section V) in order to ensure reproducible carbonyl determination on defined cell protein fractions, and to eliminate assay interference from protein samples containing (i) Cys sulfenic acid groups (via their neutralization with dithiothreitol), and (ii) DNA (via its removal by streptomycin sulfate precipitation). Lastly, the ntrDNPH assay determines carbonyl groups on cell wall polysaccharides, thus paving the way on studies to investigate cell walls acting as antioxidant defense in plants, fungi, bacteria and lichens.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Biochemistry & Molecular Biology

Multiple oxidative post-translational modifications of human glutamine synthetase mediate peroxynitrite-dependent enzyme inactivation and aggregation

Nicolas Campolo, Mauricio Mastrogiovanni, Michele Mariotti, Federico M. Issoglio, Dario Estrin, Per Hagglund, Tilman Grune, Michael J. Davies, Silvina Bartesaghi, Rafael Radi

Summary: Glutamine synthetase (GS) is an important enzyme that plays a crucial role in nitrogen metabolism. This study investigated the oxidative inactivation of human GS by peroxynitrite (ONOO-) in vitro. The results showed that ONOO- exposure led to a dose-dependent loss of GS activity and various oxidative modifications of the enzyme. Multiple tyrosine nitration sites and dityrosine cross-links were identified, but nitration of specific tyrosine residues alone was not responsible for enzyme inactivation. In addition, ONOO- induced GS aggregation and activity loss, with thiol oxidation being a key modification to elicit aggregation.

JOURNAL OF BIOLOGICAL CHEMISTRY (2023)

Article Chemistry, Physical

Titanium dioxide nanoparticle-based hydroxyl and superoxide radical production for oxidative stress biological simulations

Marianna Skipitari, Electra Kalaitzopoulou, Polyxeni Papadea, Athina Varemmenou, Vassilios E. Gavriil, Evangelia Sarantopoulou, Alkiviadis-Constantinos Cefalas, Sotiris Tsakas, Eleftheria Rosmaraki, Irene Margiolaki, Tilman Grune, Christos D. Georgiou

Summary: This study introduces a TiO2 nanoparticle-based system for high oxidative stress biological simulations. The system can produce (OH)-O center dot and O-2(center dot-) and simulate interactions with biological targets. It allows control of the production rates of these radicals and can be used for studying oxidative modifications in biological simulations.

JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY A-CHEMISTRY (2023)

Article Medicine, General & Internal

Methods on LDL particle isolation, characterization, and component fractionation for the development of novel specific oxidized LDL status markers for atherosclerotic disease risk assessment

Polyxeni Papadea, Marianna Skipitari, Electra Kalaitzopoulou, Athina Varemmenou, Maria Spiliopoulou, Marios Papasotiriou, Evangelos Papachristou, Dimitrios Goumenos, Anny Onoufriou, Eleftheria Rosmaraki, Irene Margiolaki, Christos D. Georgiou

Summary: The present study uses simple, innovative methods to isolate, characterize, and fractionate LDL in its main components for the study of specific oxidations on them. It aims to understand the oxidized low-density lipoprotein (oxLDL) status and its relation to cardiovascular disease (CVD) risk assessment. The study provides protocols for LDL isolation, purity verification, fractionation, and measurement of specific LDL component oxidative modifications, which can help in studying atherosclerosis and developing CVD prevention strategies.

FRONTIERS IN MEDICINE (2023)

Article Biochemistry & Molecular Biology

High glucose leads to redistribution of the proteasomal system

Tilman Grune, Vanessa Schnell, Tobias Jung

Summary: The impact of high glucose on cellular redox state, induction of antioxidative systems, and enhanced protein oxidation has been extensively discussed. It is known that elevated glucose levels disrupt cellular proteostasis and influence the proteasomal system. However, it is still unclear whether this is a direct reaction of the proteasomal system to high glucose or a secondary reaction to inflammatory stimuli. In this study, a dermal fibroblast cell line was exposed to high glucose to investigate if a response of the proteasomal system occurs. The study found changes in enzyme activity, expression levels, and nuclear redistribution of proteasomal components, suggesting that high glucose alone can provoke a regulatory response on the ubiquitin-proteasomal system without additional inflammatory stimuli.

BIOFACTORS (2023)

Article Surgery

Time-related Evidence of Intestinal Oxidative Stress in Obstructive Jaundice-Induced Rats

Apostolos Angelis, Ioannis D. Kostakis, Konstantinos Lilimpakis, Electra Kalaitzopoulou, Polyxeni Papadea, Marianna Skipitari, Christos D. Georgiou, Costas Vagianos

Summary: This study investigated the effects of obstructive jaundice on intestinal permeability and markers of oxidative stress in blood and intestinal mucosa. The results showed that obstructive jaundice increases oxidative stress and alters liver function. These findings provide insight into the pathophysiology of obstructive jaundice.

EUROPEAN SURGICAL RESEARCH (2023)

Article Nutrition & Dietetics

Evaluation of Modern Approaches for the Assessment of Dietary Carotenoids as Markers for Fruit and Vegetable Consumption

Thorsten Henning, Philipp Wagner, Egbert Gedat, Bastian Kochlik, Paula Kusch, Kay Sowoidnich, Marko Vastag, Jeannine Gleim, Marcel Braune, Martin Maiwald, Bernd Sumpf, Tilman Grune, Daniela Weber

Summary: The study compares non-invasive methods, such as skin measurements and an app-based short dietary record (ASDR), with conventional methods to assess dietary carotenoids. The results show that app-based intake data and skin measurements have good correlations with plasma carotenoids, making them convenient alternatives for assessing fruit and vegetable consumption. The findings suggest that ASDR records can be a suitable tool for dietary assessment in nutritional intervention studies.

NUTRIENTS (2023)

Article Nutrition & Dietetics

Patterns of Dietary Blood Markers Are Related to Frailty Status in the FRAILOMIC Validation Phase

Thorsten Henning, Bastian Kochlik, Ignacio Ara, Marcela Gonzalez-Gross, Edoardo Fiorillo, Michele Marongiu, Francesco Cucca, Fernando Rodriguez-Artalejo, Jose Antonio Carnicero Carreno, Leocadio Rodriguez-Manas, Tilman Grune, Daniela Weber

Summary: The study examines the influence of nutritional factors on frailty syndrome and identifies cross-sectional associations between diet-related blood biomarker patterns and frailty status. The results demonstrate that older adults with higher concentrations of total carotenoids, beta-carotene, and beta-cryptoxanthin are relatively robust, while those with higher lutein + zeaxanthin concentrations are more frail. These findings provide guidance for the development of future biomarker-based frailty indices.

NUTRIENTS (2023)

Article Nutrition & Dietetics

Uncovering the Relationship between Selenium Status, Age, Health, and Dietary Habits: Insights from a Large Population Study including Nonagenarian Offspring from the MARK-AGE Project

Robertina Giacconi, Francesco Piacenza, Valentina Aversano, Michele Zampieri, Alexander Buerkle, Maria Moreno Villanueva, Martijn E. T. Dolle, Eugene Jansen, Tilman Grune, Efstathios S. Gonos, Claudio Franceschi, Miriam Capri, Birgit Weinberger, Ewa Sikora, Olivier Toussaint, Florence Debacq-Chainiaux, Wolfgang Stuetz, Pieternella Eline Slagboom, Juergen Bernhardt, Maria Luisa Fernandez-Sanchez, Mauro Provinciali, Marco Malavolta

Summary: Plasma selenium levels are influenced by age, sex, nutrition, and inflammation. Inadequate selenium intake can accelerate aging and increase the risk of age-related diseases.

NUTRIENTS (2023)

Article Medicine, General & Internal

How Can We Best Measure Frailty in Cardiosurgical Patients?

Magdalena L. Laux, Christian Braun, Filip Schroeter, Daniela Weber, Aiman Moldasheva, Tilman Grune, Roya Ostovar, Martin Hartrumpf, Johannes Maximilian Albes

Summary: Frailty is an important risk factor in cardiothoracic surgery and various frailty scores have been developed. This study analyzed the frailty and outcomes of 246 patients undergoing cardiac surgery, finding that frail patients had longer hospital stays, higher complication rates, and increased 1-year mortality. Additionally, postoperative changes in laboratory markers were observed in frail patients.

JOURNAL OF CLINICAL MEDICINE (2023)

Article Astronomy & Astrophysics

Organic Catalytic Activity as a Method for Agnostic Life Detection

Christos D. Georgiou, Christopher McKay, Jean-Louis Reymond

Summary: In this study, a nearly ideal life detection instrument based on catalytic activity is proposed, which has high sensitivity but is insensitive to abiotic processes and can detect life with alternate molecular structures. The advantages of catalysis as an agnostic life detection method are demonstrated, including not requiring culturing/growing the alien life and large amplification by catalysis even in dead biomass. A hydrolytic catalysis detection instrument using chromogenic assay-based detection of various hydrolytic catalytic activities is specifically proposed, which can be used to detect activity in samples of extraterrestrial organic material from unknown life.

ASTROBIOLOGY (2023)

Article Nutrition & Dietetics

Ketogenic Diet Has Moderate Effects on the Fecal Microbiota of Wild-Type Mice

Nadine Rohwer, Racha El Hage, Christopher Smyl, Soeren Ocvirk, Tobias Goris, Tilman Grune, Alexander Swidsinski, Karsten-H. Weylandt

Summary: In this study, the effect of a 4-week ketogenic diet (KD) on the colonic microbiome of mice was examined. The results showed significant changes in the composition and quantity of gut bacteria, indicating possible anti-inflammatory effects of the KD. The findings suggest that the differential abundance of specific genera in the microbiota may be responsible for the health effects of the KD.

NUTRIENTS (2023)

Article Biochemistry & Molecular Biology

Novel oxidized LDL-based clinical markers in peritoneal dialysis patients for atherosclerosis risk assessment

Polyxeni Papadea, Electra Kalaitzopoulou, Marianna Skipitari, Athina Varemmenou, Marios Papasotiriou, Evangelos Papachristou, Dimitrios Goumenos, Tilman Grune, Christos D. Georgiou

Summary: Maintenance peritoneal dialysis (PD) is associated with cardiovascular diseases (CVDs), assessed via LDL-C. This study measures six novel oxLDL markers in atherosclerosis-prone PD patients, chronic kidney disease patients under hemodialysis (HD) and healthy controls. The levels of all oxLDL lipid-OOH markers were significantly elevated in PD patients versus control, while the levels of cholesteryl ester-/triglyceride-/free cholesterol-OOH were significantly elevated in PD versus HD patients. The study suggests the potential prognostic value of oxLDL regarding CVD risk assessment.

REDOX BIOLOGY (2023)

暂无数据