Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia

PERMANOVA-S: association test for microbial community composition that accommodates confounders and multiple distances

(2016) Zheng-Zheng Tang et al.   BIOINFORMATICS

Antimicrobial Chemicals Are Associated with Elevated Antibiotic Resistance Genes in the Indoor Dust Microbiome

(2016) Erica M. Hartmann et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Comparison of the gut microbial community between obese and lean peoples using 16S gene sequencing in a Japanese population

(2016) Akira Andoh et al.   JOURNAL OF CLINICAL BIOCHEMISTRY AND NUTRITION

Helminth infections and gut microbiota – a feline perspective

(2016) Ana M. Duarte et al.   Parasites & Vectors

Composition of the gut microbiota modulates the severity of malaria

(2016) Nicolas F. Villarino et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Community deworming alleviates geohelminth-induced immune hyporesponsiveness

(2016) Linda J. Wammes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alterations of the gut microbiome in Chinese patients with systemic lupus erythematosus

(2016) Zhixing He et al.   Gut Pathogens

The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome

(2016) Robert W. Li et al.   Scientific Reports

Cultivating Healthy Growth and Nutrition through the Gut Microbiota

(2015) Sathish Subramanian et al.   CELL

Global feasibility assessment of interrupting the transmission of soil-transmitted helminths: a statistical modelling study

(2015) Simon J Brooker et al.   LANCET INFECTIOUS DISEASES

Early life dynamics of the human gut virome and bacterial microbiome in infants

(2015) Efrem S Lim et al.   NATURE MEDICINE

Interactions between the intestinal microbiome and helminth parasites

(2015) M. M. Zaiss et al.   PARASITE IMMUNOLOGY

Beneficial effects of soy milk and fiber on high cholesterol diet-induced alteration of gut microbiota and inflammatory gene expression in rats

(2015) Seung-Min Lee et al.   Food & Function

Chronic Trichuris muris Infection in C57BL/6 Mice Causes Significant Changes in Host Microbiota and Metabolome: Effects Reversed by Pathogen Clearance

(2015) Ashley Houlden et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

A Phylogenomic View of Ecological Specialization in the Lachnospiraceae, a Family of Digestive Tract-Associated Bacteria

(2014) Conor J. Meehan et al.   Genome Biology and Evolution

Modulation of gut microbiota during probiotic-mediated attenuation of metabolic syndrome in high fat diet-fed mice

(2014) Jingjing Wang et al.   ISME Journal

Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission

(2014) Michelle G Rooks et al.   ISME Journal

Impact of Experimental Hookworm Infection on the Human Gut Microbiota

(2014) Cinzia Cantacessi et al.   JOURNAL OF INFECTIOUS DISEASES

Persistent gut microbiota immaturity in malnourished Bangladeshi children

(2014) Sathish Subramanian et al.   NATURE

An integrated catalog of reference genes in the human gut microbiome

(2014) Junhua Li et al.   NATURE BIOTECHNOLOGY

The microbiota and helminths: sharing the same niche in the human host

(2014) LAURA GLENDINNING et al.   PARASITOLOGY

Risk Factors for Soil-Transmitted Helminth Infections during the First 3 Years of Life in the Tropics; Findings from a Birth Cohort

(2014) Stefanie K. Menzies et al.   PLoS Neglected Tropical Diseases

Helminth Colonization Is Associated with Increased Diversity of the Gut Microbiota

(2014) Soo Ching Lee et al.   PLoS Neglected Tropical Diseases

Evaluation of real-time PCR for Strongyloides stercoralis and hookworm as diagnostic tool in asymptomatic schoolchildren in Cambodia

(2013) Fabian Schär et al.   ACTA TROPICA

Infection with the carcinogenic liver fluke Opisthorchis viverrini modifies intestinal and biliary microbiome

(2013) Jordan L. Plieskatt et al.   FASEB JOURNAL

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Small Intestinal Nematode Infection of Mice Is Associated with Increased Enterobacterial Loads alongside the Intestinal Tract

(2013) Sebastian Rausch et al.   PLoS One

Patent Human Infections with the Whipworm, Trichuris trichiura, Are Not Associated with Alterations in the Faecal Microbiota

(2013) Philip Cooper et al.   PLoS One

Lack of efficacy of monepantel against Teladorsagia circumcincta and Trichostrongylus colubriformis

(2013) I. Scott et al.   VETERINARY PARASITOLOGY

Biogeography of the ecosystems of the healthy human body

(2013) Yanjiao Zhou et al.   GENOME BIOLOGY

Role of the gut microbiota in health and chronic gastrointestinal disease: understanding a hidden metabolic organ

(2013) Caitriona M. Guinane et al.   Therapeutic Advances in Gastroenterology

Helminth-host immunological interactions: prevention and control of immune-mediated diseases

(2012) David E. Elliott et al.   Annals of the New York Academy of Sciences

Are new anthelmintics needed to eliminate human helminthiases?

(2012) Timothy G. Geary   CURRENT OPINION IN INFECTIOUS DISEASES

Alterations in the Porcine Colon Microbiota Induced by the Gastrointestinal Nematode Trichuris suis

(2012) Robert W. Li et al.   INFECTION AND IMMUNITY

Efficacy and mechanism of action of arachidonic acid in the treatment of hamsters infected with Schistosoma mansoni or Schistosoma haematobium

(2012) Rashika El Ridi et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Role of Leukotrienes on Protozoan and Helminth Infections

(2012) Alexandre P. Rogerio et al.   MEDIATORS OF INFLAMMATION

A framework for human microbiome research

(2012)   NATURE

Worm Burden-Dependent Disruption of the Porcine Colon Microbiota by Trichuris suis Infection

(2012) Sitao Wu et al.   PLoS One

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome

(2012) Sahar Abubucker et al.   PLoS Computational Biology

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Soil-Transmitted Helminth Reinfection after Drug Treatment: A Systematic Review and Meta-Analysis

(2012) Tie-Wu Jia et al.   PLoS Neglected Tropical Diseases

Therapeutic Helminth Infection of Macaques with Idiopathic Chronic Diarrhea Alters the Inflammatory Signature and Mucosal Microbiota of the Colon

(2012) Mara Jana Broadhurst et al.   PLoS Pathogens

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Does treatment of intestinal helminth infections influence malaria? Background and methodology of a longitudinal study of clinical, parasitological and immunological parameters in Nangapanda, Flores, Indonesia (ImmunoSPIN Study)

(2010) Aprilianto E Wiria et al.   BMC INFECTIOUS DISEASES

Alteration of the murine gut microbiota during infection with the parasitic helminth Heligmosomoides polygyrus

(2010) Seth T. Walk et al.   INFLAMMATORY BOWEL DISEASES

Exploitation of the Intestinal Microflora by the Parasitic Nematode Trichuris muris

(2010) K. S. Hayes et al.   SCIENCE

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Crystal Structure of the Novobiocin Biosynthetic Enzyme NovP: The First Representative Structure for the TylF O-Methyltransferase Superfamily

(2009) Inmaculada Gómez García et al.   JOURNAL OF MOLECULAR BIOLOGY

A single FLOTAC is more sensitive than triplicate Kato–Katz for the diagnosis of low-intensity soil-transmitted helminth infections

(2009) Stefanie Knopp et al.   TRANSACTIONS OF THE ROYAL SOCIETY OF TROPICAL MEDICINE AND HYGIENE

Review series on helminths, immune modulation and the hygiene hypothesis: Nematode coevolution with adaptive immunity, regulatory networks and the growth of inflammatory diseases

(2008) Daniel M. Altmann   IMMUNOLOGY

Identification and antimicrobial susceptibilities of Ochrobactrum spp.

(2008) Bryan Thoma et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY