A Possible Trifunctional β-Carotene Synthase Gene Identified in the Draft Genome of Aurantiochytrium sp. Strain KH105

Genomic Analysis of Genes Involved in the Biosynthesis of Very Long Chain Polyunsaturated Fatty Acids in Thraustochytrium sp. 26185

(2016) Xianming Zhao et al.   LIPIDS

Omega-3 biotechnology: Thraustochytrids as a novel source of omega-3 oils

(2012) Adarsha Gupta et al.   BIOTECHNOLOGY ADVANCES

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

ThraustochytridAurantiochytriumsp. 18W-13a Accummulates High Amounts of Squalene

(2011) Kunimitsu KAYA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Carotenoid β-Ring Hydroxylase and Ketolase from Marine Bacteria—Promiscuous Enzymes for Synthesizing Functional Xanthophylls

(2011) Norihiko Misawa   Marine Drugs

Carotenoids in Algae: Distributions, Biosyntheses and Functions

(2011) Shinichi Takaichi   Marine Drugs

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Biotechnological production of astaxanthin with Phaffia rhodozyma/Xanthophyllomyces dendrorhous

(2010) Isabell Schmidt et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The regulation of carotenoid pigmentation in flowers

(2010) Changfu Zhu et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

SOPRA: Scaffolding algorithm for paired reads via statistical optimization

(2010) Adel Dayarian et al.   BMC BIOINFORMATICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Secondary ketocarotenoid astaxanthin biosynthesis in algae: a multifunctional response to stress

(2010) Yves Lemoine et al.   PHOTOSYNTHESIS RESEARCH

Phylogenetic and Evolutionary Patterns in Microbial Carotenoid Biosynthesis Are Revealed by Comparative Genomics

(2010) Jonathan L. Klassen   PLoS One

Screening and Characterization of Squalene-Producing Thraustochytrids from Hong Kong Mangroves

(2009) Qian Li et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

The sequence and de novo assembly of the giant panda genome

(2009) Ruiqiang Li et al.   NATURE

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

(2009) Brian J. Haas et al.   NATURE

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Assessing the gene space in draft genomes

(2008) Genis Parra et al.   NUCLEIC ACIDS RESEARCH