Transcriptomic Analysis Reveal the Molecular Mechanisms of Wheat Higher-Temperature Seedling-Plant Resistance to Puccinia striiformis f. sp. tritici

Characterization of Novel Gene Yr79 and Four Additional Quantitative Trait Loci for All-Stage and High-Temperature Adult-Plant Resistance to Stripe Rust in Spring Wheat PI 182103

(2018) Junyan Feng et al.   PHYTOPATHOLOGY

The Plant Cell Reviews Plant Immunity: Receptor-Like Kinases, ROS-RLK Crosstalk, Quantitative Resistance, and the Growth/Defense Trade-Off

(2017) Nancy A. Eckardt   PLANT CELL

Molecular mapping of a new temperature-sensitive gene LrZH22 for leaf rust resistance in Chinese wheat cultivar Zhoumai 22

(2016) Cuifen Wang et al.   MOLECULAR BREEDING

Wheat transcription factor TaWRKY70 is positively involved in high-temperature seedling plant resistance to Puccinia striiformis f. sp. tritici

(2016) Junjuan Wang et al.   MOLECULAR PLANT PATHOLOGY

Temperature-Dependent Wsm1 and Wsm2 Gene-Specific Blockage of Viral Long-Distance Transport Provides Resistance to Wheat streak mosaic virus and Triticum mosaic virus in Wheat

(2016) Satyanarayana Tatineni et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Yr58: A New Stripe Rust Resistance Gene and Its Interaction with Yr46 for Enhanced Resistance

(2016) Mumta Chhetri et al.   PHYTOPATHOLOGY

The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10

(2016) Nikita Bhatnagar et al.   PLANT MOLECULAR BIOLOGY

Transcriptome Analysis Provides Insights into the Mechanisms Underlying Wheat Plant Resistance to Stripe Rust at the Adult Plant Stage

(2016) Yingbin Hao et al.   PLoS One

Transcriptome Sequencing to Identify Transcription Factor Regulatory Network and Alternative Splicing in Endothelial Cells Under VEGF Stimulation

(2015) Fang Liu et al.   JOURNAL OF MOLECULAR NEUROSCIENCE

A recently evolved hexose transporter variant confers resistance to multiple pathogens in wheat

(2015) John W Moore et al.   NATURE GENETICS

The wheat durable, multipathogen resistance geneLr34confers partial blast resistance in rice

(2015) Simon G. Krattinger et al.   PLANT BIOTECHNOLOGY JOURNAL

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Large-scale transcriptome comparison reveals distinct gene activations in wheat responding to stripe rust and powdery mildew

(2014) Hong Zhang et al.   BMC GENOMICS

A change in temperature modulates defence to yellow (stripe) rust in wheat line UC1041 independently of resistance gene Yr36

(2014) Ruth R M Bryant et al.   BMC PLANT BIOLOGY

The Stripe Rust Resistance Gene Yr10 Encodes an Evolutionary-Conserved and Unique CC–NBS–LRR Sequence in Wheat

(2014) Wei Liu et al.   Molecular Plant

Identification of Yr59 conferring high-temperature adult-plant resistance to stripe rust in wheat germplasm PI 178759

(2014) X. L. Zhou et al.   THEORETICAL AND APPLIED GENETICS

Mapping of Yr62 and a small-effect QTL for high-temperature adult-plant resistance to stripe rust in spring wheat PI 192252

(2014) Yan Lu et al.   THEORETICAL AND APPLIED GENETICS

RNA-seq differential expression studies: more sequence or more replication?

(2013) Yuwen Liu et al.   BIOINFORMATICS

Expression changes of ribosomal proteins in phosphate- and iron-deficient Arabidopsis roots predict stress-specific alterations in ribosome composition

(2013) Jinyan Wang et al.   BMC GENOMICS

Characterisation of the wheat (triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes: gene expression in Pi-stressed wheat

(2013) Youko Oono et al.   BMC GENOMICS

Understanding Molecular Mechanisms of Durable and Non-durable Resistance to Stripe Rust in Wheat Using a Transcriptomics Approach

(2013) Xianming Chen et al.   CURRENT GENOMICS

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

The wheatLr34gene provides resistance against multiple fungal pathogens in barley

(2013) Joanna M. Risk et al.   PLANT BIOTECHNOLOGY JOURNAL

Evaluation of Assembly Strategies Using RNA-Seq Data Associated with Grain Development of Wheat (Triticum aestivum L.)

(2013) Huai-Zhu Li et al.   PLoS One

A putative poplar PP2C-encoding gene negatively regulates drought and abscisic acid responses in transgenic Arabidopsis thaliana

(2013) Muhammad Arshad et al.   TREES-STRUCTURE AND FUNCTION

High genome heterozygosity and endemic genetic recombination in the wheat stripe rust fungus

(2013) Wenming Zheng et al.   Nature Communications

AtPP2CG1, a protein phosphatase 2C, positively regulates salt tolerance of Arabidopsis in abscisic acid-dependent manner

(2012) Xin Liu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants

(2012) Walter Sanseverino et al.   NUCLEIC ACIDS RESEARCH

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Reference gene selection for qPCR gene expression analysis of rust-infected wheat

(2012) Jakobus J. Scholtz et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

Recent emergence of the wheat Lr34 multi-pathogen resistance: insights from haplotype analysis in wheat, rice, sorghum and Aegilops tauschii

(2012) Simon G. Krattinger et al.   THEORETICAL AND APPLIED GENETICS

Characterization and molecular mapping of Yr52 for high-temperature adult-plant resistance to stripe rust in spring wheat germplasm PI 183527

(2012) R. S. Ren et al.   THEORETICAL AND APPLIED GENETICS

The role of WRKY transcription factors in plant abiotic stresses

(2011) Ligang Chen et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Global status of stripe rust: a review of historical and current threats

(2011) Colin R. Wellings   EUPHYTICA

Rice WRKY45 plays important roles in fungal and bacterial disease resistance

(2011) MASAKI SHIMONO et al.   MOLECULAR PLANT PATHOLOGY

Molecular analysis of common wheat genes encoding three types of cytosolic heat shock protein 90 (Hsp90): functional involvement of cytosolic Hsp90s in the control of wheat seedling growth and disease resistance

(2011) Guan-Feng Wang et al.   NEW PHYTOLOGIST

Arabidopsis WRKY46 coordinates with WRKY70 and WRKY53 in basal resistance against pathogen Pseudomonas syringae

(2011) Yanru Hu et al.   PLANT SCIENCE

Serine/threonine kinase gene Stpk-V, a key member of powdery mildew resistance gene Pm21, confers powdery mildew resistance in wheat

(2011) A. Cao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enhanced tolerance to low temperature in tobacco by over-expression of a new maize protein phosphatase 2C, ZmPP2C2

(2010) Xiaoli Hu et al.   JOURNAL OF PLANT PHYSIOLOGY

Lr34 multi-pathogen resistance ABC transporter: molecular analysis of homoeologous and orthologous genes in hexaploid wheat and other grass species

(2010) Simon G. Krattinger et al.   PLANT JOURNAL

New slow-rusting leaf rust and stripe rust resistance genes Lr67 and Yr46 in wheat are pleiotropic or closely linked

(2010) Sybil A. Herrera-Foessel et al.   THEORETICAL AND APPLIED GENETICS

Temperature Modulates Plant Defense Responses through NB-LRR Proteins

(2010) Ying Zhu et al.   PLoS Pathogens

Identification and validation of reference genes for quantitative RT-PCR normalization in wheat

(2009) Anna R Paolacci et al.   BMC MOLECULAR BIOLOGY

SnapShot: Plant Immune Response Pathways

(2009) Ralph Panstruga et al.   CELL

Meta-analysis of transcripts associated with race-specific resistance to stripe rust in wheat demonstrates common induction of blue copper-binding protein, heat-stress transcription factor, pathogen-induced WIR1A protein, and ent-kaurene synthase transcripts

(2009) Tristan E. Coram et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Analysis of Temperature Modulation of Plant Defense Against Biotrophic Microbes

(2009) Yi Wang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Primary Metabolism and Plant Defense—Fuel for the Fire

(2009) Melvin D. Bolton   MOLECULAR PLANT-MICROBE INTERACTIONS

Molecular Mapping of a Stripe Rust Resistance Gene in Spring Wheat Cultivar Zak

(2009) X. X. Sui et al.   PHYTOPATHOLOGY

Role of reactive oxygen species-generating enzymes and hydrogen peroxide during cadmium, mercury and osmotic stresses in barley root tip

(2009) Ladislav Tamás et al.   PLANTA

A Kinase-START Gene Confers Temperature-Dependent Resistance to Wheat Stripe Rust

(2009) D. Fu et al.   SCIENCE

A Putative ABC Transporter Confers Durable Resistance to Multiple Fungal Pathogens in Wheat

(2009) S. G. Krattinger et al.   SCIENCE

Modulation of defense signal transduction by flagellin-induced WRKY41 transcription factor in Arabidopsis thaliana

(2008) Kuniaki Higashi et al.   MOLECULAR GENETICS AND GENOMICS

OsWRKY62 is a Negative Regulator of Basal and Xa21-Mediated Defense against Xanthomonas oryzae pv. oryzae in Rice

(2008) Ying Peng et al.   Molecular Plant

Stress- and Pathogen-Induced Arabidopsis WRKY48 is a Transcriptional Activator that Represses Plant Basal Defense

(2008) Deng-Hui Xing et al.   Molecular Plant

Transcriptome analysis of the wheat–Puccinia striiformis f. sp. tritici interaction

(2008) TRISTAN E. CORAM et al.   MOLECULAR PLANT PATHOLOGY

Transcriptome analysis of high-temperature adult-plant resistance conditioned byYr39during the wheat-Puccinia striiformisf. sp.triticiinteraction

(2008) TRISTAN E. CORAM et al.   MOLECULAR PLANT PATHOLOGY

The stem rust resistance gene Rpg5 encodes a protein with nucleotide-binding-site, leucine-rich, and protein kinase domains

(2008) R. Brueggeman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA