Integrative Transcriptomic Analysis Uncovers Novel Gene Modules That Underlie the Sulfate Response in Arabidopsis thaliana

ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index

(2017) Takeshi Obayashi et al.   PLANT AND CELL PHYSIOLOGY

Grain subproteome responses to nitrogen and sulfur supply in diploid wheat Triticum monococcum ssp. monococcum

(2017) Titouan Bonnot et al.   PLANT JOURNAL

Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana

(2017) Javier Canales et al.   PLANT JOURNAL

Sulfur availability regulates plant growth via glucose-TOR signaling

(2017) Yihan Dong et al.   Nature Communications

The Arabidopsis thaliana Nuclear Factor Y Transcription Factors

(2017) Hang Zhao et al.   Frontiers in Plant Science

Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis

(2017) Min Zhang et al.   Scientific Reports

ChlamyNET: a Chlamydomonas gene co-expression network reveals global properties of the transcriptome and the early setup of key co-expression patterns in the green lineage

(2016) Francisco J. Romero-Campero et al.   BMC GENOMICS

LATE ELONGATED HYPOCOTYL regulates photoperiodic flowering via the circadian clock in Arabidopsis

(2016) Mi-Jeong Park et al.   BMC PLANT BIOLOGY

Adaptation of Root Function by Nutrient-Induced Plasticity of Endodermal Differentiation

(2016) Marie Barberon et al.   CELL

Sulfation pathways in plants

(2016) Anna Koprivova et al.   CHEMICO-BIOLOGICAL INTERACTIONS

New nodes and edges in the glucosinolate molecular network revealed by proteomics and metabolomics of Arabidopsis myb28 / 29 and cyp79B2 / B3 glucosinolate mutants

(2016) Islam Mostafa et al.   Journal of Proteomics

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

(2016) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations

(2016) Cornelia M. Hooper et al.   NUCLEIC ACIDS RESEARCH

System analysis of metabolism and the transcriptome inArabidopsis thalianaroots reveals differential co-regulation upon iron, sulfur and potassium deficiency

(2016) Ilaria Forieri et al.   PLANT CELL AND ENVIRONMENT

Meta-analysis and meta-regression of transcriptomic responses to water stress in Arabidopsis

(2016) Joshua S. Rest et al.   PLANT JOURNAL

Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis

(2016) Zhimin Jiang et al.   Nature Communications

Nuclear Localised MORE SULPHUR ACCUMULATION1 Epigenetically Regulates Sulphur Homeostasis in Arabidopsis thaliana

(2016) Xin-Yuan Huang et al.   PLoS Genetics

Sulfur deficiency-induced repressor proteins optimize glucosinolate biosynthesis in plants

(2016) F. Aarabi et al.   Science Advances

Amino Acid Export in Developing Arabidopsis Seeds Depends on UmamiT Facilitators

(2015) Benedikt Müller et al.   CURRENT BIOLOGY

Maize maintains growth in response to decreased nitrate supply through a highly dynamic and developmental stage-specific transcriptional response

(2015) Darren Plett et al.   PLANT BIOTECHNOLOGY JOURNAL

The cytosolic branched-chain aminotransferases of Arabidopsis thaliana influence methionine supply, salvage and glucosinolate metabolism

(2015) Kurt Lächler et al.   PLANT MOLECULAR BIOLOGY

Plant sulfur and Big Data

(2015) Stanislav Kopriva et al.   PLANT SCIENCE

Uncovering miRNAs involved in crosstalk between nutrient deficiencies in Arabidopsis

(2015) Gang Liang et al.   Scientific Reports

The family of LSU-like proteins

(2015) Agnieszka Sirko et al.   Frontiers in Plant Science

Transcriptome and metabolome analysis of plant sulfate starvation and resupply provides novel information on transcriptional regulation of metabolism associated with sulfur, nitrogen and phosphorus nutritional responses in Arabidopsis

(2015) Monika Bielecka et al.   Frontiers in Plant Science

TqPCR: A Touchdown qPCR Assay with Significantly Improved Detection Sensitivity and Amplification Efficiency of SYBR Green qPCR

(2015) Qian Zhang et al.   PLoS One

Signaling in the plant cytosol: cysteine or sulfide?

(2014) Cecilia Gotor et al.   AMINO ACIDS

Molecular mechanisms of regulation of sulfate assimilation: first steps on a long road

(2014) Anna Koprivova et al.   Frontiers in Plant Science

Transporters in plant sulfur metabolism

(2014) Tamara Gigolashvili et al.   Frontiers in Plant Science

Systems analysis of transcriptome data provides new hypotheses about Arabidopsis root response to nitrate treatments

(2014) Javier Canales et al.   Frontiers in Plant Science

Sequence-Specific Transcription Factor NF-Y Displays Histone-like DNA Binding and H2B-like Ubiquitination

(2013) Marco Nardini et al.   CELL

Cysteine and Cysteine-Related Signaling Pathways in Arabidopsis thaliana

(2013) Luis C. Romero et al.   Molecular Plant

A  -Glutamyl Cyclotransferase Protects Arabidopsis Plants from Heavy Metal Toxicity by Recycling Glutamate to Maintain Glutathione Homeostasis

(2013) B. Paulose et al.   PLANT CELL

Aberrant gene expression in the ArabidopsisSULTR1;2mutants suggests a possible regulatory role for this sulfate transporter in response to sulfur nutrient status

(2013) Bo Zhang et al.   PLANT JOURNAL

Identification of Cytokinin-Responsive Genes Using Microarray Meta-Analysis and RNA-Seq in Arabidopsis

(2013) A. Bhargava et al.   PLANT PHYSIOLOGY

The response and recovery of the Arabidopsis thaliana transcriptome to phosphate starvation

(2012) Jongchan Woo et al.   BMC PLANT BIOLOGY

Topological analysis and interactive visualization of biological networks and protein structures

(2012) Nadezhda T Doncheva et al.   Nature Protocols

Comprehensive literature review and statistical considerations for microarray meta-analysis

(2012) George C. Tseng et al.   NUCLEIC ACIDS RESEARCH

Characterization of recombinant nitrile-specifier proteins (NSPs) of Arabidopsis thaliana: Dependency on Fe(II) ions and the effect of glucosinolate substrate and reaction conditions

(2012) Xiang Yi Kong et al.   PHYTOCHEMISTRY

The Promiscuous Life of Plant NUCLEAR FACTOR Y Transcription Factors

(2012) K. Petroni et al.   PLANT CELL

Additional role of O-acetylserine as a sulfur status-independent regulator during plant growth

(2012) Hans-Michael Hubberten et al.   PLANT JOURNAL

Application of the Gini Correlation Coefficient to Infer Regulatory Relationships in Transcriptome Analysis

(2012) C. Ma et al.   PLANT PHYSIOLOGY

Functional and Transcriptome Analysis Reveals an Acclimatization Strategy for Abiotic Stress Tolerance Mediated by Arabidopsis NF-YA Family Members

(2012) Marco Antonio Leyva-González et al.   PLoS One

Control of sulfur partitioning between primary and secondary metabolism in Arabidopsis

(2012) Stanislav Kopriva et al.   Frontiers in Plant Science

Sulfur Assimilation in Photosynthetic Organisms: Molecular Functions and Regulations of Transporters and Assimilatory Enzymes

(2011) Hideki Takahashi et al.   Annual Review of Plant Biology

Cell Identity Regulators Link Development and Stress Responses in the Arabidopsis Root

(2011) Anjali S. Iyer-Pascuzzi et al.   DEVELOPMENTAL CELL

Metabolite profiling of Arabidopsis seedlings in response to exogenous sinalbin and sulfur deficiency

(2011) Jixiu Zhang et al.   PHYTOCHEMISTRY

Heterodimers of theArabidopsisTranscription Factors bZIP1 and bZIP53 Reprogram Amino Acid Metabolism during Low Energy Stress

(2011) Katrin Dietrich et al.   PLANT CELL

Interplay of SLIM1 and miR395 in the regulation of sulfate assimilation in Arabidopsis

(2011) Cintia G. Kawashima et al.   PLANT JOURNAL

The key enzyme of sulfate assimilation, adenosine 5′-phosphosulfate reductase, is regulated by HY5 in Arabidopsis

(2011) Bok-Rye Lee et al.   PLANT JOURNAL

Diversity in the Architecture of ATLs, a Family of Plant Ubiquitin-Ligases, Leads to Recognition and Targeting of Substrates in Different Cellular Environments

(2011) Victor Aguilar-Hernández et al.   PLoS One

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis

(2010) Mariana Obertello et al.   BMC Systems Biology

Regulation of Sulfate Uptake and Assimilation—the Same or Not the Same?

(2010) Jean-Claude Davidian et al.   Molecular Plant

MicroRNA395 mediates regulation of sulfate accumulation and allocation in Arabidopsis thaliana

(2010) Gang Liang et al.   PLANT JOURNAL

Biosynthesis of glucosinolates – gene discovery and beyond

(2010) Ida E. Sønderby et al.   TRENDS IN PLANT SCIENCE

Filtering for increased power for microarray data analysis

(2009) Amber J Hackstadt et al.   BMC BIOINFORMATICS

HAG2/MYB76 and HAG3/MYB29 exert a specific and coordinated control on the regulation of aliphatic glucosinolate biosynthesis inArabidopsis thaliana

(2009) Tamara Gigolashvili et al.   NEW PHYTOLOGIST

A functional analysis of the pyrimidine catabolic pathway in Arabidopsis

(2009) Rita Zrenner et al.   NEW PHYTOLOGIST

Extensive expression regulation and lack of heterologous enzymatic activity of the Class II trehalose metabolism proteins fromArabidopsis thaliana

(2009) MATTHEW RAMON et al.   PLANT CELL AND ENVIRONMENT

CNI1/ATL31, a RING-type ubiquitin ligase that functions in the carbon/nitrogen response for growth phase transition in Arabidopsis seedlings

(2009) Takeo Sato et al.   PLANT JOURNAL

VirtualPlant: A Software Platform to Support Systems Biology Research

(2009) M. S. Katari et al.   PLANT PHYSIOLOGY

The Arabidopsis Tandem Zinc Finger Protein AtTZF1 Traffics between the Nucleus and Cytoplasmic Foci and Binds Both DNA and RNA

(2009) M. C. Pomeranz et al.   PLANT PHYSIOLOGY

REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways

(2009) R. Rawat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Systems Approach Uncovers Restrictions for Signal Interactions Regulating Genome-wide Responses to Nutritional Cues in Arabidopsis

(2009) Gabriel Krouk et al.   PLoS Computational Biology

Genevestigator Transcriptome Meta-Analysis and Biomarker Search using Rice and Barley Gene Expression Databases

(2008) Philip Zimmermann et al.   Molecular Plant

AtMYBL2, a protein with a single MYB domain, acts as a negative regulator of anthocyanin biosynthesis in Arabidopsis

(2008) Kyoko Matsui et al.   PLANT JOURNAL

Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types

(2008) Cintia Goulart Kawashima et al.   PLANT JOURNAL

Expression patterns within the Arabidopsis C/S1 bZIP transcription factor network: availability of heterodimerization partners controls gene expression during stress response and development

(2008) Fridtjof Weltmeier et al.   PLANT MOLECULAR BIOLOGY

Global Transcript Levels Respond to Small Changes of the Carbon Status during Progressive Exhaustion of Carbohydrates in Arabidopsis Rosettes

(2008) B. Usadel et al.   PLANT PHYSIOLOGY

Differential Regulation of the Expression of Two High-Affinity Sulfate Transporters, SULTR1.1 and SULTR1.2, in Arabidopsis

(2008) H. Rouached et al.   PLANT PHYSIOLOGY