Single-cell transcriptional dynamics of flavivirus infection

Extreme heterogeneity of influenza virus infection in single cells

(2018) Alistair B Russell et al.   eLife

Genetic Profiling and Comorbidities of Zika Infection

(2017) Mohammad Ali Moni et al.   JOURNAL OF INFECTIOUS DISEASES

Dengue Virus Hijacks a Noncanonical Oxidoreductase Function of a Cellular Oligosaccharyltransferase Complex

(2017) David L. Lin et al.   mBio

A CRISPR screen defines a signal peptide processing pathway required by flaviviruses

(2016) Rong Zhang et al.   NATURE

Genetic dissection of Flaviviridae host factors through genome-scale CRISPR screens

(2016) Caleb D. Marceau et al.   NATURE

Zika Virus and Birth Defects — Reviewing the Evidence for Causality

(2016) Sonja A. Rasmussen et al.   NEW ENGLAND JOURNAL OF MEDICINE

PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements

(2016) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Dengue Virus Inhibition of Autophagic Flux and Dependency of Viral Replication on Proteasomal Degradation of the Autophagy Receptor p62

(2015) Philippe Metz et al.   JOURNAL OF VIROLOGY

Combating emerging viral threats

(2015) E. Bekerman et al.   SCIENCE

Dengue Virus Uses a Non-Canonical Function of the Host GBF1-Arf-COPI System for Capsid Protein Accumulation on Lipid Droplets

(2015) Nestor G. Iglesias et al.   TRAFFIC

Kinome siRNA screen identifies novel cell-type specific dengue host target genes

(2014) Yong-Jun Kwon et al.   ANTIVIRAL RESEARCH

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

β-catenin promotes the type I IFN synthesis and the IFN-dependent signaling response but is suppressed by influenza A virus-induced RIG-I/NF-κB signaling

(2014) Andrea Hillesheim et al.   Cell Communication and Signaling

Full-length RNA-seq from single cells using Smart-seq2

(2014) Simone Picelli et al.   Nature Protocols

ER stress-induced cell death mechanisms

(2013) Renata Sano et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Species-specific impact of the autophagy machinery on Chikungunya virus infection

(2013) Delphine Judith et al.   EMBO REPORTS

The global distribution and burden of dengue

(2013) Samir Bhatt et al.   NATURE

DNASU plasmid and PSI:Biology-Materials repositories: resources to accelerate biological research

(2013) Catherine Y. Seiler et al.   NUCLEIC ACIDS RESEARCH

Quantitative real-time PCR detection of Zika virus and evaluation with field-caught Mosquitoes

(2013) Oumar Faye et al.   Virology Journal

Host Cell Transcriptome Profile during Wild-Type and Attenuated Dengue Virus Infection

(2013) October M. Sessions et al.   PLoS Neglected Tropical Diseases

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

G Protein-Coupled Receptor Kinase 2 Promotes Flaviviridae Entry and Replication

(2012) Caroline Le Sommer et al.   PLoS Neglected Tropical Diseases

Development and characterization of a stable luciferase dengue virus for high-throughput screening

(2011) Gang Zou et al.   ANTIVIRAL RESEARCH

The NumPy Array: A Structure for Efficient Numerical Computation

(2011) Stéfan van der Walt et al.   COMPUTING IN SCIENCE & ENGINEERING

Dengue Virus Modulates the Unfolded Protein Response in a Time-dependent Manner

(2011) José Peña et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

TRAM1 is involved in disposal of ER membrane degradation substrates

(2010) Caroline L. Ng et al.   EXPERIMENTAL CELL RESEARCH

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

Production of Hepatitis C Virus Lacking the Envelope-Encoding Genes for Single-Cycle Infection by Providing Homologous Envelope Proteins or Vesicular Stomatitis Virus Glycoproteins in trans

(2010) R. Li et al.   JOURNAL OF VIROLOGY

Gene expression analysis during dengue virus infection in HepG2 cells reveals virus control of innate immune response

(2009) Thaís M. Conceição et al.   JOURNAL OF INFECTION

Gene expression profiling of dengue infected human primary cells identifies secreted mediators in vivo

(2009) Aniuska Becerra et al.   JOURNAL OF MEDICAL VIROLOGY

Discovery of insect and human dengue virus host factors

(2009) October M. Sessions et al.   NATURE

The dengue virus type 2 envelope protein fusion peptide is essential for membrane fusion

(2009) Claire Y.-H. Huang et al.   VIROLOGY

Development of real time PCR for detection and quantitation of dengue viruses

(2009) K R Gurukumar et al.   Virology Journal

SeqAn An efficient, generic C++ library for sequence analysis

(2008) Andreas Döring et al.   BMC BIOINFORMATICS

Active  -Catenin Signaling Is an Inhibitory Pathway for Human Immunodeficiency Virus Replication in Peripheral Blood Mononuclear Cells

(2008) A. Kumar et al.   JOURNAL OF VIROLOGY

Advantages of a single-cycle production assay to study cell culture-adaptive mutations of hepatitis C virus

(2008) R. S. Russell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temperature-dependent production of pseudoinfectious dengue reporter virus particles by complementation

(2008) Camilo Ansarah-Sobrinho et al.   VIROLOGY