Two distinct DNA sequences recognized by transcription factors represent enthalpy and entropy optima
出版年份 2018 全文链接
标题
Two distinct DNA sequences recognized by transcription factors represent enthalpy and entropy optima
作者
关键词
-
出版物
eLife
Volume 7, Issue -, Pages -
出版商
eLife Sciences Organisation, Ltd.
发表日期
2018-04-11
DOI
10.7554/elife.32963
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Impact of cytosine methylation on DNA binding specificities of human transcription factors
- (2017) Yimeng Yin et al. SCIENCE
- Measuring quantitative effects of methylation on transcription factor–DNA binding affinity
- (2017) Zheng Zuo et al. Science Advances
- DNA-dependent formation of transcription factor pairs alters their binding specificity
- (2015) Arttu Jolma et al. NATURE
- The androgen receptor cistrome is extensively reprogrammed in human prostate tumorigenesis
- (2015) Mark M Pomerantz et al. NATURE GENETICS
- Applying thermodynamic profiling in lead finding and optimization
- (2015) Gerhard Klebe NATURE REVIEWS DRUG DISCOVERY
- Intermolecular epistasis shaped the function and evolution of an ancient transcription factor and its DNA binding sites
- (2015) Dave W Anderson et al. eLife
- Conservation of transcription factor binding specificities across 600 million years of bilateria evolution
- (2015) Kazuhiro R Nitta et al. eLife
- Entropy-Enthalpy Compensation: Role and Ramifications in Biomolecular Ligand Recognition and Design
- (2013) John D. Chodera et al. Annual Review of Biophysics
- DNA-Binding Specificities of Human Transcription Factors
- (2013) Arttu Jolma et al. CELL
- Thermodynamic and Structural Determinants of Differential Pdx1 Binding to Elements from the Insulin and IAPP Promoters
- (2013) Monique Bastidas et al. JOURNAL OF MOLECULAR BIOLOGY
- Covariation between homeodomain transcription factors and the shape of their DNA binding sites
- (2013) Iris Dror et al. NUCLEIC ACIDS RESEARCH
- DNA-binding specificity changes in the evolution of forkhead transcription factors
- (2013) S. Nakagawa et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- G84E mutation in HOXB13 is firmly associated with prostate cancer risk: a meta-analysis
- (2013) Hang Huang et al. TUMOR BIOLOGY
- Towards automated crystallographic structure refinement withphenix.refine
- (2012) Pavel V. Afonine et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Sequence Discrimination by DNA-binding Domain of ETS Family Transcription Factor PU.1 Is Linked to Specific Hydration of Protein-DNA Interface
- (2012) Gregory M. K. Poon JOURNAL OF BIOLOGICAL CHEMISTRY
- Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ1 and χ2 Dihedral Angles
- (2012) Robert B. Best et al. Journal of Chemical Theory and Computation
- Germline Mutations inHOXB13and Prostate-Cancer Risk
- (2012) Charles M. Ewing et al. NEW ENGLAND JOURNAL OF MEDICINE
- REFMAC5 for the refinement of macromolecular crystal structures
- (2011) Garib N. Murshudov et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Overview of theCCP4 suite and current developments
- (2011) Martyn D. Winn et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Optimization of the CHARMM Additive Force Field for DNA: Improved Treatment of the BI/BII Conformational Equilibrium
- (2011) Katarina Hart et al. Journal of Chemical Theory and Computation
- Jury remains out on simple models of transcription factor specificity
- (2011) Quaid Morris et al. NATURE BIOTECHNOLOGY
- Quantitative analysis demonstrates most transcription factors require only simple models of specificity
- (2011) Yue Zhao et al. NATURE BIOTECHNOLOGY
- Structural Basis for Sequence Specific DNA Binding and Protein Dimerization of HOXA13
- (2011) Yonghong Zhang et al. PLoS One
- Molecular mechanisms of epistasis within and between genes
- (2011) Ben Lehner TRENDS IN GENETICS
- XDS
- (2010) Wolfgang Kabsch ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Features and development ofCoot
- (2010) P. Emsley et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- PHENIX: a comprehensive Python-based system for macromolecular structure solution
- (2010) Paul D. Adams et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities
- (2010) A. Jolma et al. GENOME RESEARCH
- High-throughput production of human proteins for crystallization: The SGC experience
- (2010) Pavel Savitsky et al. JOURNAL OF STRUCTURAL BIOLOGY
- Accelerating molecular dynamic simulation on graphics processing units
- (2009) Mark S. Friedrichs et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- CHARMM: The biomolecular simulation program
- (2009) B. R. Brooks et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Conformational analysis of nucleic acids revisited: Curves+
- (2009) R. Lavery et al. NUCLEIC ACIDS RESEARCH
- Diversity and Complexity in DNA Recognition by Transcription Factors
- (2009) G. Badis et al. SCIENCE
- Variation in Homeodomain DNA Binding Revealed by High-Resolution Analysis of Sequence Preferences
- (2008) Michael F. Berger et al. CELL
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