Experimental Chagas disease-induced perturbations of the fecal microbiome and metabolome

A tale of two sites: how inflammation can reshape the microbiomes of the gut and lungs

(2016) Brittan S. Scales et al.   JOURNAL OF LEUKOCYTE BIOLOGY

Microbiome-wide association studies link dynamic microbial consortia to disease

(2016) Jack A. Gilbert et al.   NATURE

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

(2016) Mingxun Wang et al.   NATURE BIOTECHNOLOGY

Microbial metabolism of dietary components to bioactive metabolites: opportunities for new therapeutic interventions

(2016) Linda S. Zhang et al.   Genome Medicine

The microenvironment of injured murine gut elicits a local pro-restitutive microbiota

(2016) Ashfaqul Alam et al.   Nature Microbiology

Limited Ability of Posaconazole To Cure both Acute and Chronic Trypanosoma cruzi Infections Revealed by Highly SensitiveIn VivoImaging

(2015) Amanda Fortes Francisco et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Non-lethal Inhibition of Gut Microbial Trimethylamine Production for the Treatment of Atherosclerosis

(2015) Zeneng Wang et al.   CELL

Inflammatory responses and intestinal injury development during acute Trypanosoma cruzi infection are associated with the parasite load

(2015) Bruna Perez Vazquez et al.   Parasites & Vectors

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

(2015) William Walters et al.   mSystems

The Earth Microbiome project: successes and aspirations

(2014) Jack A Gilbert et al.   BMC BIOLOGY

Meta-analyses of human gut microbes associated with obesity and IBD

(2014) William A. Walters et al.   FEBS LETTERS

A Gut Microbial Metabolite of Linoleic Acid, 10-Hydroxy-cis-12-octadecenoic Acid, Ameliorates Intestinal Epithelial Barrier Impairment Partially via GPR40-MEK-ERK Pathway

(2014) Junki Miyamoto et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Role of the Lower and Upper Intestine in the Production and Absorption of Gut Microbiota-Derived PUFA Metabolites

(2014) Céline Druart et al.   PLoS One

Determinants of disease phenotype in trypanosomatid parasites

(2014) Laura-Isobel McCall et al.   TRENDS IN PARASITOLOGY

High Fat Diet Modulates Trypanosoma cruzi Infection Associated Myocarditis

(2014) Fnu Nagajyothi et al.   PLoS Neglected Tropical Diseases

Hydroxy fatty acid production byPediococcussp.

(2013) Michiki Takeuchi et al.   EUROPEAN JOURNAL OF LIPID SCIENCE AND TECHNOLOGY

EMPeror: a tool for visualizing high-throughput microbial community data

(2013) Yoshiki Vázquez-Baeza et al.   GigaScience

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Global metabolic profiling of animal and human tissues via UPLC-MS

(2012) Elizabeth J Want et al.   Nature Protocols

As yet uncultured bacteria phylogenetically classified asPrevotella,Lachnospiraceaeincertae sedis and unclassifiedBacteroidales,ClostridialesandRuminococcaceaemay play a predominant role in ruminal biohydrogenation

(2011) Sharon A. Huws et al.   ENVIRONMENTAL MICROBIOLOGY

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

The chronic gastrointestinal manifestations of Chagas disease

(2010) Nilce Mitiko Matsuda et al.   Clinics

Conjugated Linoleic Acid Ameliorates Inflammation-Induced Colorectal Cancer in Mice through Activation of PPARγ

(2010) Nicholas P. Evans et al.   JOURNAL OF NUTRITION

Chagas disease

(2010) Anis Rassi et al.   LANCET

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Systemic gut microbial modulation of bile acid metabolism in host tissue compartments

(2010) J. R. Swann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Insufficient TLR Activation Contributes to the Slow Development of CD8+ T Cell Responses in Trypanosoma cruzi Infection

(2009) A. M. Padilla et al.   JOURNAL OF IMMUNOLOGY

Mechanism of conjugated linoleic acid and vaccenic acid formation in human faecal suspensions and pure cultures of intestinal bacteria

(2009) F. M. McIntosh et al.   MICROBIOLOGY-SGM

OpenMS – An open-source software framework for mass spectrometry

(2008) Marc Sturm et al.   BMC BIOINFORMATICS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS