Reactome graph database: Efficient access to complex pathway data

biochem4j: Integrated and extensible biochemical knowledge through graph databases

(2017) Neil Swainston et al.   PLoS One

STON: exploring biological pathways using the SBGN standard and graph databases

(2016) Vasundra Touré et al.   BMC BIOINFORMATICS

Representing and querying disease networks using graph databases

(2016) Artem Lysenko et al.   BioData Mining

The Reactome pathway Knowledgebase

(2015) Antonio Fabregat et al.   NUCLEIC ACIDS RESEARCH

The Mouse Genome Database (MGD): facilitating mouse as a model for human biology and disease

(2014) Janan T. Eppig et al.   NUCLEIC ACIDS RESEARCH

Are graph databases ready for bioinformatics?

(2013) Christian Theil Have et al.   BIOINFORMATICS