PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems

Comparing individual-based approaches to modelling the self-organization of multicellular tissues

(2017) James M. Osborne et al.   PLoS Computational Biology

When Seeing Isn't Believing: How Math Can Guide Our Interpretation of Measurements and Experiments

(2017) Paul Macklin   Cell Systems

Semblance of Heterogeneity in Collective Cell Migration

(2017) Linus J. Schumacher et al.   Cell Systems

Hypoxia and metabolic adaptation of cancer cells

(2016) K L Eales et al.   Oncogenesis

A high-content image-based method for quantitatively studying context-dependent cell population dynamics

(2016) Colleen M. Garvey et al.   Scientific Reports

BioFVM: an efficient, parallelized diffusive transport solver for 3-D biological simulations

(2015) Ahmadreza Ghaffarizadeh et al.   BIOINFORMATICS

libRoadRunner: a high performance SBML simulation and analysis library: Table 1.

(2015) Endre T. Somogyi et al.   BIOINFORMATICS

Large-Scale Parallel Simulations of 3D Cell Colony Dynamics: The Cellular Environment

(2015) Maciej Cytowski et al.   COMPUTING IN SCIENCE & ENGINEERING

43. Cell-based modeling of mechanical and chemical stress in tissues during cryoprotocols

(2015) James Benson et al.   CRYOBIOLOGY

A Novel, Patient-Specific Mathematical Pathology Approach for Assessment of Surgical Volume: Application to Ductal Carcinomain situof The Breast

(2015) Mary E. Edgerton et al.   Analytical Cellular Pathology

Biocellion: accelerating computer simulation of multicellular biological system models

(2014) S. Kang et al.   BIOINFORMATICS

Morpheus: a user-friendly modeling environment for multiscale and multicellular systems biology

(2014) Jörn Starruß et al.   BIOINFORMATICS

Defining normoxia, physoxia and hypoxia in tumours—implications for treatment response

(2014) S R McKeown   BRITISH JOURNAL OF RADIOLOGY

Large-Scale Parallel Simulations of 3D Cell Colony Dynamics

(2014) Maciej Cytowski et al.   COMPUTING IN SCIENCE & ENGINEERING

Chaste: An Open Source C++ Library for Computational Physiology and Biology

(2013) Gary R. Mirams et al.   PLoS Computational Biology

The Need for Integrative Computational Oncology: An Illustrated Example through MMP-Mediated Tissue Degradation

(2013) Shannon M. Mumenthaler et al.   Frontiers in Oncology

Analysis on the current status of targeted drug delivery to tumors

(2012) Il Keun Kwon et al.   JOURNAL OF CONTROLLED RELEASE

Patient-calibrated agent-based modelling of ductal carcinoma in situ (DCIS): From microscopic measurements to macroscopic predictions of clinical progression

(2012) Paul Macklin et al.   JOURNAL OF THEORETICAL BIOLOGY

Improved patient-specific calibration for agent-based cancer modeling

(2012) Alice Z. Hyun et al.   JOURNAL OF THEORETICAL BIOLOGY

Multiscale Cancer Modeling

(2011) Thomas S. Deisboeck et al.   Annual Review of Biomedical Engineering

Integrative physical oncology

(2011) Haralampos Hatzikirou et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

A Comprehensive Model of the Spatio-Temporal Stem Cell and Tissue Organisation in the Intestinal Crypt

(2011) Peter Buske et al.   PLoS Computational Biology

The benefits and challenges associated with the use of drug delivery systems in cancer therapy

(2010) Edna Cukierman et al.   BIOCHEMICAL PHARMACOLOGY

A cell-based simulation software for multi-cellular systems

(2010) Stefan Hoehme et al.   BIOINFORMATICS

Migration of breast cancer cells: Understanding the roles of volume exclusion and cell-to-cell adhesion

(2010) Matthew J. Simpson et al.   PHYSICAL REVIEW E

Nonlinear modelling of cancer: bridging the gap between cells and tumours

(2009) J S Lowengrub et al.   NONLINEARITY

Individual-based and continuum models of growing cell populations: a comparison

(2008) Helen Byrne et al.   JOURNAL OF MATHEMATICAL BIOLOGY

A New Ghost Cell/Level Set Method for Moving Boundary Problems: Application to Tumor Growth

(2008) Paul Macklin et al.   JOURNAL OF SCIENTIFIC COMPUTING