Stochastic shielding and edge importance for Markov chains with timescale separation

Effects of ion channel noise on neural circuits: an application to the respiratory pattern generator to investigate breathing variability

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Reduction of multiscale stochastic biochemical reaction networks using exact moment derivation

(2017) Jae Kyoung Kim et al.   PLoS Computational Biology

Long-time analytic approximation of large stochastic oscillators: Simulation, analysis and inference

(2017) Giorgos Minas et al.   PLoS Computational Biology

Stochastic representations of ion channel kinetics and exact stochastic simulation of neuronal dynamics

(2014) David F. Anderson et al.   JOURNAL OF COMPUTATIONAL NEUROSCIENCE

Diffusion approximation-based simulation of stochastic ion channels: which method to use?

(2014) Danilo Pezo et al.   Frontiers in Computational Neuroscience

On how correlations between excitatory and inhibitory synaptic inputs maximize the information rate of neuronal firing

(2014) Pavel A. Puzerey et al.   Frontiers in Computational Neuroscience

Uncoupled Analysis of Stochastic Reaction Networks in Fluctuating Environments

(2014) Christoph Zechner et al.   PLoS Computational Biology

Measuring Edge Importance: A Quantitative Analysis of the Stochastic Shielding Approximation for Random Processes on Graphs

(2014) Deena R Schmidt et al.   Journal of Mathematical Neuroscience

Simplification of reversible Markov chains by removal of states with low equilibrium occupancy

(2012) Ghanim Ullah et al.   JOURNAL OF THEORETICAL BIOLOGY

Stochastic-Shielding Approximation of Markov Chains and its Application to Efficiently Simulate Random Ion-Channel Gating

(2012) Nicolaus T. Schmandt et al.   PHYSICAL REVIEW LETTERS

Simple, Fast and Accurate Implementation of the Diffusion Approximation Algorithm for Stochastic Ion Channels with Multiple States

(2012) Patricio Orio et al.   PLoS One

VISUALIZING FITNESS LANDSCAPES

(2011) David M. McCandlish   EVOLUTION

K-core decomposition of Internet graphs: hierarchies, self-similarity and measurement biases

(2011) José Alvarez-Hamelin et al.   Networks and Heterogeneous Media

Community detection in graphs

(2009) Santo Fortunato   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Larval Dispersal and Marine Population Connectivity

(2008) Robert K. Cowen et al.   Annual Review of Marine Science

Noise in Gene Regulatory Networks

(2008) Ioannis Lestas et al.   IEEE TRANSACTIONS ON AUTOMATIC CONTROL

Zinc Potentiates Neuronal Nicotinic Receptors by Increasing Burst Duration

(2007) Bernard Hsiao et al.   JOURNAL OF NEUROPHYSIOLOGY