Recognition of sites of functional specialisation in all known eukaryotic protein kinase families

Modular engineering of cellular signaling proteins and networks

(2016) Russell M Gordley et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Conservation of structural fluctuations in homologous protein kinases and its implications on functional sites

(2016) Raju Kalaivani et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

CATH FunFHMMer web server: protein functional annotations using functional family assignments

(2015) Sayoni Das et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The BioGRID interaction database: 2015 update

(2014) Andrew Chatr-aryamontri et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Kin-Driver: a database of driver mutations in protein kinases

(2014) F. L. Simonetti et al.   Database-The Journal of Biological Databases and Curation

Cyclin-dependent kinases

(2014) Marcos Malumbres   GENOME BIOLOGY

Profiling the Substrate Specificity of Protein Kinases by On-Bead Screening of Peptide Libraries

(2013) Thi B. Trinh et al.   BIOCHEMISTRY

Structural and evolutionary adaptation of rhoptry kinases and pseudokinases, a family of coccidian virulence factors

(2013) Eric Talevich et al.   BMC EVOLUTIONARY BIOLOGY

A large-scale evaluation of computational protein function prediction

(2013) Predrag Radivojac et al.   NATURE METHODS

Emerging methods in protein co-evolution

(2013) David de Juan et al.   NATURE REVIEWS GENETICS

iPfam: a database of protein family and domain interactions found in the Protein Data Bank

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

cGMP-Dependent Protein Kinase Iβ Interacts with p44/WDR77 to Regulate Androgen Receptor-Driven Gene Expression

(2013) Liran Zhou et al.   PLoS One

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Rapid detection, classification and accurate alignment of up to a million or more related protein sequences

(2009) Andrew F. Neuwald   BIOINFORMATICS

Combining specificity determining and conserved residues improves functional site prediction

(2009) Olga V Kalinina et al.   BMC BIOINFORMATICS

Contribution of Non-catalytic Core Residues to Activity and Regulation in Protein Kinase A

(2009) Jie Yang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Partially-supervised protein subclass discovery with simultaneous annotation of functional residues

(2009) Benjamin Georgi et al.   BMC STRUCTURAL BIOLOGY

INTREPID—INformation-theoretic TREe traversal for Protein functional site IDentification

(2008) Sriram Sankararaman et al.   BIOINFORMATICS

Characterization and prediction of residues determining protein functional specificity

(2008) John A. Capra et al.   BIOINFORMATICS

Substrate Discrimination among Mitogen-activated Protein Kinases through Distinct Docking Sequence Motifs

(2008) Douglas L. Sheridan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

SDR: a database of predicted specificity-determining residues in proteins

(2008) J. E. Donald et al.   NUCLEIC ACIDS RESEARCH

Coevolution in defining the functional specificity

(2008) Saikat Chakrabarti et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS