Cox-nnet: An artificial neural network method for prognosis prediction of high-throughput omics data

Using neural networks for reducing the dimensions of single-cell RNA-Seq data

(2017) Chieh Lin et al.   NUCLEIC ACIDS RESEARCH

Novel personalized pathway-based metabolomics models reveal key metabolic pathways for breast cancer diagnosis

(2016) Sijia Huang et al.   Genome Medicine

Deep learning

(2015) Yann LeCun et al.   NATURE

Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning

(2015) Babak Alipanahi et al.   NATURE BIOTECHNOLOGY

Regularization Paths for Generalized Linear Models via Coordinate Descent

(2015) Jerome Friedman et al.   Journal of Statistical Software

A Novel Model to Combine Clinical and Pathway-Based Transcriptomic Information for the Prognosis Prediction of Breast Cancer

(2014) Sijia Huang et al.   PLoS Computational Biology

Influence of survivin (BIRC5) and caspase-9 (CASP9) functional polymorphisms in renal cell carcinoma development: a study in a southern European population

(2013) Inês Marques et al.   MOLECULAR BIOLOGY REPORTS

Phase II and Biomarker Study of the Dual MET/VEGFR2 Inhibitor Foretinib in Patients With Papillary Renal Cell Carcinoma

(2012) Toni K. Choueiri et al.   JOURNAL OF CLINICAL ONCOLOGY

Estimating a time-dependent concordance index for survival prediction models with covariate dependent censoring

(2012) Thomas A. Gerds et al.   STATISTICS IN MEDICINE

Coordinate descent algorithms for nonconvex penalized regression, with applications to biological feature selection

(2011) Patrick Breheny et al.   Annals of Applied Statistics

Emerging roles for the BAI1 protein family in the regulation of phagocytosis, synaptogenesis, neurovasculature, and tumor development

(2011) Sarah M. Cork et al.   JOURNAL OF MOLECULAR MEDICINE-JMM

Brain-Specific Angiogenesis Inhibitor 1 is a Putative Factor for Inhibition of Neovascular Formation in Renal Cell Carcinoma

(2011) Toshikazu Izutsu et al.   JOURNAL OF UROLOGY

The Concordance IndexCand the Mann-Whitney Parameter Pr(X>Y) with Randomly Censored Data

(2009) James A. Koziol et al.   BIOMETRICAL JOURNAL

Random survival forests

(2008) Hemant Ishwaran et al.   Annals of Applied Statistics

Advances in Targeting the Ras/Raf/MEK/Erk Mitogen-Activated Protein Kinase Cascade with MEK Inhibitors for Cancer Therapy

(2008) B. B. Friday et al.   CLINICAL CANCER RESEARCH

Improved grading and survival prediction of human astrocytic brain tumors by artificial neural network analysis of gene expression microarray data

(2008) L. P. Petalidis et al.   MOLECULAR CANCER THERAPEUTICS