In vivo insertion pool sequencing identifies virulence factors in a complex fungal–host interaction

UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy

(2017) Tom Smith et al.   GENOME RESEARCH

Genome-wide identification of bacterial plant colonization genes

(2017) Benjamin J. Cole et al.   PLOS BIOLOGY

Genome-wide discovery of novel M1T1 group A streptococcal determinants important for fitness and virulence during soft-tissue infection

(2017) Yoann Le Breton et al.   PLoS Pathogens

Genome-wide transposon mutagenesis of Proteus mirabilis: Essential genes, fitness factors for catheter-associated urinary tract infection, and the impact of polymicrobial infection on fitness requirements

(2017) Chelsie E. Armbruster et al.   PLoS Pathogens

The Mechanism Forming the Cell Surface of Tip-Growing Rooting Cells Is Conserved among Land Plants

(2016) Suvi Honkanen et al.   CURRENT BIOLOGY

Quantitative insertion-site sequencing (QIseq) for high throughput phenotyping of transposon mutants

(2016) Iraad F. Bronner et al.   GENOME RESEARCH

Phytohormone sensing in the biotrophic fungusUstilago maydis- the dual role of the transcription factor Rss1

(2016) Franziska Rabe et al.   MOLECULAR MICROBIOLOGY

Characterization of ApB73, a virulence factor important for colonization ofZea maysby the smutUstilago maydis

(2016) Alexandra Stirnberg et al.   MOLECULAR PLANT PATHOLOGY

High-throughput bacterial functional genomics in the sequencing era

(2015) Andrew N Gray et al.   CURRENT OPINION IN MICROBIOLOGY

Insights from 20 years of bacterial genome sequencing

(2015) Miriam Land et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Tn5 transposase and tagmentation procedures for massively scaled sequencing projects

(2014) Simone Picelli et al.   GENOME RESEARCH

Virulence of the maize smutUstilago maydisis shaped by organ-specific effectors

(2014) Lena Schilling et al.   MOLECULAR PLANT PATHOLOGY

NextGenMap: fast and accurate read mapping in highly polymorphic genomes

(2013) Fritz J. Sedlazeck et al.   BIOINFORMATICS

Compatibility in the Ustilago maydis–Maize Interaction Requires Inhibition of Host Cysteine Proteases by the Fungal Effector Pit2

(2013) André N. Mueller et al.   PLoS Pathogens

A fine scale phenotype-genotype virulence map of a bacterial pathogen

(2012) T. van Opijnen et al.   GENOME RESEARCH

Identification of MrtAB, an ABC Transporter Specifically Required for Yersinia pseudotuberculosis to Colonize the Mesenteric Lymph Nodes

(2012) Gregory T. Crimmins et al.   PLoS Pathogens

The use of FLP-mediated recombination for the functional analysis of an effector gene family in the biotrophic smut fungus Ustilago maydis

(2010) Yuliya Khrunyk et al.   NEW PHYTOLOGIST

Identifying Genetic Determinants Needed to Establish a Human Gut Symbiont in Its Habitat

(2009) Andrew L. Goodman et al.   Cell Host & Microbe

Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants

(2009) G. C. Langridge et al.   GENOME RESEARCH

Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms

(2009) Tim van Opijnen et al.   NATURE METHODS

Golden Gate Shuffling: A One-Pot DNA Shuffling Method Based on Type IIs Restriction Enzymes

(2009) Carola Engler et al.   PLoS One

Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung

(2009) J. D. Gawronski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Pep1, a Secreted Effector Protein of Ustilago maydis, Is Required for Successful Invasion of Plant Cells

(2009) Gunther Doehlemann et al.   PLoS Pathogens

Insight into the molecular requirements for pathogenicity of Fusarium oxysporum f. sp. lycopersici through large-scale insertional mutagenesis

(2009) Caroline B Michielse et al.   GENOME BIOLOGY

Systematic Genetic Analysis of Virulence in the Human Fungal Pathogen Cryptococcus neoformans

(2008) Oliver W. Liu et al.   CELL

PEDANT covers all complete RefSeq genomes

(2008) M. C. Walter et al.   NUCLEIC ACIDS RESEARCH

T-DNA insertion, plasmid rescue and integration analysis in the model mycorrhizal fungus Laccaria bicolor

(2008) Minna Kemppainen et al.   Microbial Biotechnology