Extreme haplotype variation in the desiccation-tolerant clubmoss Selaginella lepidophylla
出版年份 2018 全文链接
标题
Extreme haplotype variation in the desiccation-tolerant clubmoss Selaginella lepidophylla
作者
关键词
-
出版物
Nature Communications
Volume 9, Issue 1, Pages -
出版商
Springer Nature
发表日期
2017-12-27
DOI
10.1038/s41467-017-02546-5
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons
- (2017) Shujun Ou et al. PLANT PHYSIOLOGY
- What makes up plant genomes: The vanishing line between transposable elements and genes
- (2016) Dongyan Zhao et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- The Small Nuclear Genomes ofSelaginellaAre Associated with a Low Rate of Genome Size Evolution
- (2016) Anthony E. Baniaga et al. Genome Biology and Evolution
- Near-optimal probabilistic RNA-seq quantification
- (2016) Nicolas L Bray et al. NATURE BIOTECHNOLOGY
- Phased diploid genome assembly with single-molecule real-time sequencing
- (2016) Chen-Shan Chin et al. NATURE METHODS
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Progress, challenges and the future of crop genomes
- (2015) Todd P Michael et al. CURRENT OPINION IN PLANT BIOLOGY
- Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum
- (2015) Robert VanBuren et al. NATURE
- StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
- (2015) Mihaela Pertea et al. NATURE BIOTECHNOLOGY
- A metacalibrated time-tree documents the early rise of flowering plant phylogenetic diversity
- (2015) Susana Magallón et al. NEW PHYTOLOGIST
- The resurrection genome ofBoea hygrometrica: A blueprint for survival of dehydration
- (2015) Lihong Xiao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Trehalose Accumulation Triggers Autophagy during Plant Desiccation
- (2015) Brett Williams et al. PLoS Genetics
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Plant genome size variation: bloating and purging DNA
- (2014) T. P. Michael Briefings in Functional Genomics
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Architecture and evolution of a minute plant genome
- (2013) Enrique Ibarra-Laclette et al. NATURE
- Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
- (2013) Chen-Shan Chin et al. NATURE METHODS
- Molecular mechanisms of desiccation tolerance in the resurrection glacial relic Haberlea rhodopensis
- (2012) Tsanko S. Gechev et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
- (2012) Y. Wang et al. NUCLEIC ACIDS RESEARCH
- methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
- (2012) Altuna Akalin et al. GENOME BIOLOGY
- Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
- (2011) Felix Krueger et al. BIOINFORMATICS
- MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
- (2011) Carson Holt et al. BMC BIOINFORMATICS
- Ancestral polyploidy in seed plants and angiosperms
- (2011) Yuannian Jiao et al. NATURE
- Two-Phase Resolution of Polyploidy in theArabidopsisMetabolic Network Gives Rise to Relative and Absolute Dosage Constraints
- (2011) Michaël Bekaert et al. PLANT CELL
- The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants
- (2011) J. A. Banks et al. SCIENCE
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences
- (2010) Y. Han et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
- (2010) A. Zemach et al. SCIENCE
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- Selaginella and 400 Million Years of Separation
- (2008) Jo Ann Banks Annual Review of Plant Biology
- WGCNA: an R package for weighted correlation network analysis
- (2008) Peter Langfelder et al. BMC BIOINFORMATICS
- LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
- (2008) David Ellinghaus et al. BMC BIOINFORMATICS
- How to usefully compare homologous plant genes and chromosomes as DNA sequences
- (2008) Eric Lyons et al. PLANT JOURNAL
- Synteny and Collinearity in Plant Genomes
- (2008) H. Tang et al. SCIENCE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started