标题
Clustering huge protein sequence sets in linear time
作者
关键词
-
出版物
Nature Communications
Volume 9, Issue 1, Pages -
出版商
Springer Nature
发表日期
2018-06-25
DOI
10.1038/s41467-018-04964-5
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Mutation effects predicted from sequence co-variation
- (2017) Thomas A Hopf et al. NATURE BIOTECHNOLOGY
- Protein structure determination using metagenome sequence data
- (2017) Sergey Ovchinnikov et al. SCIENCE
- MMseqs software suite for fast and deep clustering and searching of large protein sequence sets
- (2016) Maria Hauser et al. BIOINFORMATICS
- Uniclust databases of clustered and deeply annotated protein sequences and alignments
- (2016) Milot Mirdita et al. NUCLEIC ACIDS RESEARCH
- The MG-RAST metagenomics database and portal in 2015
- (2015) Andreas Wilke et al. NUCLEIC ACIDS RESEARCH
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- Gene Ontology Consortium: going forward
- (2014) NUCLEIC ACIDS RESEARCH
- kClust: fast and sensitive clustering of large protein sequence databases
- (2013) Maria Hauser et al. BMC BIOINFORMATICS
- Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
- (2013) Mads Albertsen et al. NATURE BIOTECHNOLOGY
- IMG/M 4 version of the integrated metagenome comparative analysis system
- (2013) Victor M. Markowitz et al. NUCLEIC ACIDS RESEARCH
- SSW Library: An SIMD Smith-Waterman C/C++ Library for Use in Genomic Applications
- (2013) Mengyao Zhao et al. PLoS One
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Functional assignment of metagenomic data: challenges and applications
- (2012) T. Prakash et al. BRIEFINGS IN BIOINFORMATICS
- Ultrafast clustering algorithms for metagenomic sequence analysis
- (2012) W. Li et al. BRIEFINGS IN BIOINFORMATICS
- From genomics to metagenomics
- (2012) Narayan Desai et al. CURRENT OPINION IN BIOTECHNOLOGY
- RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data
- (2011) Y. Zhao et al. BIOINFORMATICS
- Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
- (2011) Matthew B. Scholz et al. CURRENT OPINION IN BIOTECHNOLOGY
- The sequence read archive: explosive growth of sequencing data
- (2011) Y. Kodama et al. NUCLEIC ACIDS RESEARCH
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started