Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis

Tissue and cell-type co-expression networks of transcription factors and wood component genes in Populus trichocarpa

(2017) Rui Shi et al.   PLANTA

Reciprocal cross-regulation of VND and SND multigene TF families for wood formation inPopulus trichocarpa

(2017) Ying-Chung Jimmy Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants

(2016) Lívia Vargas et al.   Biotechnology for Biofuels

An essential role of caffeoyl shikimate esterase in monolignol biosynthesis inMedicago truncatula

(2016) Chan Man Ha et al.   PLANT JOURNAL

4-Coumaroyl and Caffeoyl Shikimic Acids Inhibit 4-Coumaric Acid:Coenzyme A Ligases and Modulate Metabolic Flux for 3-Hydroxylation in Monolignol Biosynthesis of Populus trichocarpa

(2015) Chien-Yuan Lin et al.   Molecular Plant

Phosphorylation is an on/off switch for 5-hydroxyconiferaldehydeO-methyltransferase activity in poplar monolignol biosynthesis

(2015) Jack P. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Disruption of Mediator rescues the stunted growth of a lignin-deficient Arabidopsis mutant

(2014) Nicholas D. Bonawitz et al.   NATURE

A robust chromatin immunoprecipitation protocol for studying transcription factor–DNA interactions and histone modifications in wood-forming tissue

(2014) Wei Li et al.   Nature Protocols

A simple improved-throughput xylem protoplast system for studying wood formation

(2014) Ying-Chung Lin et al.   Nature Protocols

Systems Biology of Lignin Biosynthesis inPopulus trichocarpa: Heteromeric 4-Coumaric Acid:Coenzyme A Ligase Protein Complex Formation, Regulation, and Numerical Modeling

(2014) Hsi-Chuan Chen et al.   PLANT CELL

Complete Proteomic-Based Enzyme Reaction and Inhibition Kinetics Reveal How Monolignol Biosynthetic Enzyme Families Affect Metabolic Flux and Lignin inPopulus trichocarpa

(2014) Jack P. Wang et al.   PLANT CELL

Lignin biosynthesis perturbations affect secondary cell wall composition and saccharification yield in Arabidopsis thaliana

(2013) Rebecca Van Acker et al.   Biotechnology for Biofuels

Effect of Lignin Genetic Modification on Wood Anatomy of Aspen Trees

(2013) Balazs Horvath et al.   IAWA JOURNAL

Monolignol Pathway 4-Coumaric Acid:Coenzyme A Ligases in Populus. trichocarpa: Novel Specificity, Metabolic Regulation, and Simulation of Coenzyme A Ligation Fluxes

(2013) H.-C. Chen et al.   PLANT PHYSIOLOGY

Regulation of phenylalanine ammonia-lyase (PAL) gene family in wood forming tissue of Populus trichocarpa

(2013) Rui Shi et al.   PLANTA

Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa

(2013) S. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Caffeoyl Shikimate Esterase (CSE) Is an Enzyme in the Lignin Biosynthetic Pathway in Arabidopsis

(2013) R. Vanholme et al.   SCIENCE

The Cellulase-Mediated Saccharification on Wood Derived from Transgenic Low-Lignin Lines of Black Cottonwood (Populus trichocarpa)

(2012) Douyong Min et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Comprehensive Quantification of Monolignol-Pathway Enzymes in Populus trichocarpa by Protein Cleavage Isotope Dilution Mass Spectrometry

(2012) Christopher M. Shuford et al.   JOURNAL OF PROTEOME RESEARCH

Whole plant cell wall characterization using solution-state 2D NMR

(2012) Shawn D Mansfield et al.   Nature Protocols

Populus trichocarpacell wall chemistry and ultrastructure trait variation, genetic control and genetic correlations

(2012) Ilga Porth et al.   NEW PHYTOLOGIST

Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC–MS/MS based protein quantification and metabolic flux analysis

(2012) Jack P. Wang et al.   PLANTA

Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Populus trichocarpa

(2012) Q. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transgenic poplars with reduced lignin show impaired xylem conductivity, growth efficiency and survival

(2011) STEVEN L. VOELKER et al.   PLANT CELL AND ENVIRONMENT

Salicylic acid mediates the reduced growth of lignin down-regulated plants

(2011) L. Gallego-Giraldo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Membrane protein complexes catalyze both 4- and 3-hydroxylation of cinnamic acid derivatives in monolignol biosynthesis

(2011) H.-C. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Down-regulation of glycosyltransferase 8D genes in Populus trichocarpa caused reduced mechanical strength and xylan content in wood

(2011) Q. Li et al.   TREE PHYSIOLOGY

Whole-exome sequencing for finding de novo mutations in sporadic mental retardation

(2011) Peter N Robinson   GENOME BIOLOGY

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Specific down-regulation of PAL genes by artificial microRNAs in Populus trichocarpa

(2010) Rui Shi et al.   PLANTA

High-Throughput Screening Techniques for Biomass Conversion

(2009) Stephen R. Decker et al.   BioEnergy Research

BioNumbers—the database of key numbers in molecular and cell biology

(2009) Ron Milo et al.   NUCLEIC ACIDS RESEARCH

Solution-state 2D NMR of ball-milled plant cell wall gels in DMSO-d6/pyridine-d5

(2009) Hoon Kim et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Towards a Systems Approach for Lignin Biosynthesis in Populus trichocarpa: Transcript Abundance and Specificity of the Monolignol Biosynthetic Genes

(2009) Rui Shi et al.   PLANT AND CELL PHYSIOLOGY

Pretreatment: the key to unlocking low-cost cellulosic ethanol

(2007) Bin Yang et al.   Biofuels Bioproducts & Biorefining-Biofpr