Cellular stress alters 3′UTR landscape through alternative polyadenylation and isoform-specific degradation
出版年份 2018 全文链接
标题
Cellular stress alters 3′UTR landscape through alternative polyadenylation and isoform-specific degradation
作者
关键词
-
出版物
Nature Communications
Volume 9, Issue 1, Pages -
出版商
Springer Nature
发表日期
2018-06-05
DOI
10.1038/s41467-018-04730-7
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Context-Dependent and Disease-Specific Diversity in Protein Interactions within Stress Granules
- (2018) Sebastian Markmiller et al. CELL
- The Stress Granule Transcriptome Reveals Principles of mRNA Accumulation in Stress Granules
- (2017) Anthony Khong et al. MOLECULAR CELL
- PolyA_DB 3 catalogs cleavage and polyadenylation sites identified by deep sequencing in multiple genomes
- (2017) Ruijia Wang et al. NUCLEIC ACIDS RESEARCH
- Activity-Dependent Regulation of Alternative Cleavage and Polyadenylation During Hippocampal Long-Term Potentiation
- (2017) Mariana M. Fontes et al. Scientific Reports
- CVD and Oxidative Stress
- (2017) Karla Cervantes Gracia et al. Journal of Clinical Medicine
- The integrated stress response
- (2016) Karolina Pakos‐Zebrucka et al. EMBO REPORTS
- Mechanistic insights into mammalian stress granule dynamics
- (2016) Marc D. Panas et al. JOURNAL OF CELL BIOLOGY
- Oxidative Modification and Its Implications for the Neurodegeneration of Parkinson’s Disease
- (2016) Junjun Zhao et al. MOLECULAR NEUROBIOLOGY
- Alternative polyadenylation of mRNA precursors
- (2016) Bin Tian et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- RNA-binding protein CPEB1 remodels host and viral RNA landscapes
- (2016) Ranjan Batra et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Database Resources of the National Center for Biotechnology Information
- (2016) NUCLEIC ACIDS RESEARCH
- Oxidative stress: A major pathogenesis and potential therapeutic target of antioxidative agents in Parkinson’s disease and Alzheimer’s disease
- (2016) Tianfang Jiang et al. PROGRESS IN NEUROBIOLOGY
- 3′READS+, a sensitive and accurate method for 3′ end sequencing of polyadenylated RNA
- (2016) Dinghai Zheng et al. RNA
- The differential expression of alternatively polyadenylated transcripts is a common stress-induced response mechanism that modulates mammalian mRNA expression in a quantitative and qualitative fashion
- (2016) Ina Hollerer et al. RNA
- Evolution and Biological Roles of Alternative 3′UTRs
- (2016) Christine Mayr TRENDS IN CELL BIOLOGY
- Principles and Properties of Stress Granules
- (2016) David S.W. Protter et al. TRENDS IN CELL BIOLOGY
- Oxidative stress signaling to chromatin in health and disease
- (2016) Sarah Kreuz et al. Epigenomics
- RNA-binding protein CPEB1 remodels host and viral RNA landscapes
- (2016) Ranjan Batra et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Intronic cleavage and polyadenylation regulates gene expression during DNA damage response through U1 snRNA
- (2016) Emral Devany et al. Cell Discovery
- Integrated stress response of vertebrates is regulated by four eIF2α kinases
- (2016) Shusuke Taniuchi et al. Scientific Reports
- Systematic Profiling of Poly(A)+ Transcripts Modulated by Core 3’ End Processing and Splicing Factors Reveals Regulatory Rules of Alternative Cleavage and Polyadenylation
- (2015) Wencheng Li et al. PLoS Genetics
- Endoplasmic Reticulum Stress in Malignancy
- (2014) Hanna J. Clarke et al. CANCER CELL
- Gene Ontology Consortium: going forward
- (2014) NUCLEIC ACIDS RESEARCH
- The role of reactive oxygen species and metabolism on cancer cells and their microenvironment
- (2014) Ana Costa et al. SEMINARS IN CANCER BIOLOGY
- The Hallmarks of Aging
- (2013) Carlos López-Otín et al. CELL
- Eukaryotic Stress Granules Are Cleared by Autophagy and Cdc48/VCP Function
- (2013) J. Ross Buchan et al. CELL
- The eIF2α kinases: their structures and functions
- (2013) Neysan Donnelly et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- DNA damage induces targeted, genome-wide variation of poly(A) sites in budding yeast
- (2013) J. H. Graber et al. GENOME RESEARCH
- 3' UTR-isoform choice has limited influence on the stability and translational efficiency of most mRNAs in mouse fibroblasts
- (2013) N. Spies et al. GENOME RESEARCH
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- U1 snRNP Determines mRNA Length and Regulates Isoform Expression
- (2012) Michael G. Berg et al. CELL
- PARP1 Represses PAP and Inhibits Polyadenylation during Heat Shock
- (2012) Dafne Campigli Di Giammartino et al. MOLECULAR CELL
- Analysis of alternative cleavage and polyadenylation by 3′ region extraction and deep sequencing
- (2012) Mainul Hoque et al. NATURE METHODS
- Fiji: an open-source platform for biological-image analysis
- (2012) Johannes Schindelin et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Cleavage factor Imis a key regulator of 3′ UTR length
- (2012) Andreas R. Gruber et al. RNA Biology
- Alternative polyadenylation: New insights from global analyses
- (2012) Y. Shi RNA
- Dynamic association-dissociation and harboring of endogenous mRNAs in stress granules
- (2011) J. Zhang et al. JOURNAL OF CELL SCIENCE
- Transcriptional activity regulates alternative cleavage and polyadenylation
- (2011) Z. Ji et al. Molecular Systems Biology
- Controlling gene expression in response to stress
- (2011) Eulàlia de Nadal et al. NATURE REVIEWS GENETICS
- Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq
- (2011) P. J. Shepard et al. RNA
- The Aging Stress Response
- (2010) Marcia C. Haigis et al. MOLECULAR CELL
- Noncanonical transcript forms in yeast and their regulation during environmental stress
- (2010) O. K. Yoon et al. RNA
- Sodium arsenite delays the differentiation of C2C12 mouse myoblast cells and alters methylation patterns on the transcription factor myogenin
- (2010) Amanda A. Steffens et al. TOXICOLOGY AND APPLIED PHARMACOLOGY
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- Widespread Shortening of 3′UTRs by Alternative Cleavage and Polyadenylation Activates Oncogenes in Cancer Cells
- (2009) Christine Mayr et al. CELL
- Arsenic-Induced Carcinogenesis—Oxidative Stress as a Possible Mode of Action and Future Research Needs for More Biologically Based Risk Assessment
- (2009) Kirk T. Kitchin et al. CHEMICAL RESEARCH IN TOXICOLOGY
- Biased Chromatin Signatures around Polyadenylation Sites and Exons
- (2009) Noah Spies et al. MOLECULAR CELL
- Progressive lengthening of 3' untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development
- (2009) Z. Ji et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Alternative isoform regulation in human tissue transcriptomes
- (2008) Eric T. Wang et al. NATURE
- Genome-Wide Analysis of MEF2 Transcriptional Program Reveals Synaptic Target Genes and Neuronal Activity-Dependent Polyadenylation Site Selection
- (2008) Steven W. Flavell et al. NEURON
- Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites
- (2008) R. Sandberg et al. SCIENCE
- In utero and postnatal exposure to arsenic alters pulmonary structure and function
- (2008) R. Clark Lantz et al. TOXICOLOGY AND APPLIED PHARMACOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now