Genome-wide analysis of gene regulation mechanisms during Drosophila spermatogenesis

Blocking promiscuous activation at cryptic promoters directs cell type–specific gene expression

(2017) Jongmin Kim et al.   SCIENCE

Data analysis algorithm for DamID-seq profiling of chromatin proteins in Drosophila melanogaster

(2016) Daniil A. Maksimov et al.   CHROMOSOME RESEARCH

Structure of promoter-bound TFIID and model of human pre-initiation complex assembly

(2016) Robert K. Louder et al.   NATURE

CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites

(2014) Yuki Naito et al.   BIOINFORMATICS

Highly Specific and Efficient CRISPR/Cas9-Catalyzed Homology-Directed Repair inDrosophila

(2014) Scott J. Gratz et al.   GENETICS

Transcription factor Comr acts as a direct activator in the genetic program controlling spermatogenesis in D. melanogaster

(2014) P. P. Laktionov et al.   MOLECULAR BIOLOGY

dREAM co-operates with insulator-binding proteins and regulates expression at divergently paired genes

(2014) Michael Korenjak et al.   NUCLEIC ACIDS RESEARCH

Chromatin Insulator Factors Involved in Long-Range DNA Interactions and Their Role in the Folding of the Drosophila Genome

(2014) Jutta Vogelmann et al.   PLoS Genetics

Developmental variation of the SUUR protein binding correlates with gene regulation and specific chromatin types in D. melanogaster

(2013) Daniil A. Maksimov et al.   CHROMOSOMA

Genome Engineering of Drosophila with the CRISPR RNA-Guided Cas9 Nuclease

(2013) Scott J. Gratz et al.   GENETICS

Genome-Wide and Cell-Specific Epigenetic Analysis Challenges the Role of Polycomb in Drosophila Spermatogenesis

(2013) Sherif El-Sharnouby et al.   PLoS Genetics

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Epigenetic regulation of olfactory receptor gene expression by the Myb-MuvB/dREAM complex

(2012) C. K. Sim et al.   GENES & DEVELOPMENT

DREME: motif discovery in transcription factor ChIP-seq data

(2011) Timothy L. Bailey   BIOINFORMATICS

The THO complex is required for nucleolar integrity in Drosophila spermatocytes

(2011) S. Moon et al.   DEVELOPMENT

Sequential changes at differentiation gene promoters as they become active in a stem cell lineage

(2011) X. Chen et al.   DEVELOPMENT

Wake-up-call, a lin-52 paralogue, and Always early, a lin-9 homologue physically interact, but have opposing functions in regulating testis-specific gene expression

(2011) Karen Doggett et al.   DEVELOPMENTAL BIOLOGY

MiMIC: a highly versatile transposon insertion resource for engineering Drosophila melanogaster genes

(2011) Koen J T Venken et al.   NATURE METHODS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Molecular mechanisms of gene regulation during Drosophila spermatogenesis

(2009) Helen White-Cooper   REPRODUCTION

Analysis of Homeodomain Specificities Allows the Family-wide Prediction of Preferred Recognition Sites

(2008) Marcus B. Noyes et al.   CELL