Allelic variants of OsSUB1A cause differential expression of transcription factor genes in response to submergence in rice

Transcriptomic Analysis of Gibberellin- and Paclobutrazol-Treated Rice Seedlings under Submergence

(2017) Jing Xiang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Jasmonate Regulates Plant Responses to Postsubmergence Reoxygenation through Transcriptional Activation of Antioxidant Synthesis

(2017) Li-Bing Yuan et al.   PLANT PHYSIOLOGY

NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway

(2017) Hao Liu et al.   Frontiers in Plant Science

Functional analysis of a cold-responsive rice WRKY gene, OsWRKY71

(2016) Chi-Yeol Kim et al.   Plant Biotechnology Reports

A Positive Feedback Loop Governed by SUB1A1 Interaction with MITOGEN-ACTIVATED PROTEIN KINASE3 Imparts Submergence Tolerance in Rice

(2016) Pallavi Singh et al.   PLANT CELL

Microarray-based gene expression analysis of strong seed dormancy in rice cv. N22 and less dormant mutant derivatives

(2016) Tao Wu et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

TCP Transcription Factors at the Interface between Environmental Challenges and the Plant’s Growth Responses

(2016) Selahattin Danisman   Frontiers in Plant Science

Transcriptome analysis in different rice cultivars provides novel insights into desiccation and salinity stress responses

(2016) Rama Shankar et al.   Scientific Reports

PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants

(2015) Chi-Nga Chow et al.   NUCLEIC ACIDS RESEARCH

OsbZIP23 and OsbZIP45, members of the rice basic leucine zipper transcription factor family, are involved in drought tolerance

(2015) Su-Hyun Park et al.   Plant Biotechnology Reports

Cross-Species Network Analysis Uncovers Conserved Nitrogen-Regulated Network Modules in Rice

(2015) Mariana Obertello et al.   PLANT PHYSIOLOGY

OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice

(2015) Hua Wu et al.   PLANT SCIENCE

Comparative Transcriptome Analysis of Shoots and Roots of TNG67 and TCN1 Rice Seedlings under Cold Stress and Following Subsequent Recovery: Insights into Metabolic Pathways, Phytohormones, and Transcription Factors

(2015) Yun-Wei Yang et al.   PLoS One

Upregulation of jasmonate biosynthesis and jasmonate-responsive genes in rice leaves in response to a bacterial pathogen mimic

(2014) Ashish Ranjan et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Overexpression of OsMYB48-1, a Novel MYB-Related Transcription Factor, Enhances Drought and Salinity Tolerance in Rice

(2014) Haiyan Xiong et al.   PLoS One

Molecular characterization of two small heat shock protein genes in rice: their expression patterns, localizations, networks, and heterogeneous overexpressions

(2013) Deok-Jae Ham et al.   MOLECULAR BIOLOGY REPORTS

OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus

(2013) Tetsuya Chujo et al.   PLANT MOLECULAR BIOLOGY

Genome-wide identification and analysis of the B3 superfamily of transcription factors in Brassicaceae and major crop plants

(2013) Fred Y. Peng et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis

(2012) Amit Katiyar et al.   BMC GENOMICS

AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots

(2012) Muhammad Rashid et al.   Evolutionary Bioinformatics

Duplications and Expression of RADIALIS-Like Genes in Dipsacales

(2012) Geraldine S. Boyden et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance

(2012) Dongfeng Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots inOryza sativa

(2012) LU WANG et al.   PLANT CELL AND ENVIRONMENT

Gene expression analysis in response to low and high temperature and oxidative stresses in rice: Combination of stresses evokes different transcriptional changes as against stresses applied individually

(2012) Dheeraj Mittal et al.   PLANT SCIENCE

The Rice B-Box Zinc Finger Gene Family: Genomic Identification, Characterization, Expression Profiling and Diurnal Analysis

(2012) Jianyan Huang et al.   PLoS One

Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress

(2012) D. Todaka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rice RING protein OsBBI1 with E3 ligase activity confers broad-spectrum resistance against Magnaporthe oryzae by modifying the cell wall defence

(2011) Wei Li et al.   CELL RESEARCH

Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress

(2011) Harsh Chauhan et al.   MOLECULAR GENETICS AND GENOMICS

The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice

(2011) Takeshi Fukao et al.   PLANT CELL

Identifying novel QTLs for submergence tolerance in rice cultivars IR72 and Madabaru

(2011) Endang M. Septiningsih et al.   THEORETICAL AND APPLIED GENETICS

Iron homeostasis and iron acquisition in plants: maintenance, functions and consequences

(2010) Shao Jian Zheng   ANNALS OF BOTANY

Life in the balance: a signaling network controlling survival of flooding

(2010) Julia Bailey-Serres et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome-wide analysis of NAC transcription factor family in rice

(2010) Mohammed Nuruzzaman et al.   GENE

Stunt or elongate? Two opposite strategies by which rice adapts to floods

(2010) Keisuke Nagai et al.   JOURNAL OF PLANT RESEARCH

Identification of Fe-excess-induced genes in rice shoots reveals a WRKY transcription factor responsive to Fe, drought and senescence

(2010) Felipe Klein Ricachenevsky et al.   MOLECULAR BIOLOGY REPORTS

Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes

(2010) Satoko Matsukura et al.   MOLECULAR GENETICS AND GENOMICS

The Submergence Tolerance Regulator Sub1A Mediates Stress-Responsive Expression of AP2/ERF Transcription Factors

(2010) K.-H. Jung et al.   PLANT PHYSIOLOGY

Molecular marker survey and expression analyses of the rice submergence-tolerance gene SUB1A

(2010) Namrata Singh et al.   THEORETICAL AND APPLIED GENETICS

Submergence Tolerant Rice: SUB1’s Journey from Landrace to Modern Cultivar

(2010) Julia Bailey-Serres et al.   Rice

Characterization of WRKY co-regulatory networks in rice and Arabidopsis

(2009) Stefano Berri et al.   BMC PLANT BIOLOGY

Submergence tolerance in relation to variable floodwater conditions in rice

(2009) Krishna Kaveri Das et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Responses of SUB1 rice introgression lines to submergence in the field: Yield and grain quality

(2009) Sudhanshu Singh et al.   FIELD CROPS RESEARCH

Identification and expression analysis of OsHsfs in rice

(2009) Chuang Wang et al.   Journal of Zhejiang University-SCIENCE B

Genetics of high-rise rice

(2009) Laurentius A. C. J. Voesenek et al.   NATURE

The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water

(2009) Yoko Hattori et al.   NATURE

Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data

(2009) J. M. Ruijter et al.   NUCLEIC ACIDS RESEARCH

PlnTFDB: updated content and new features of the plant transcription factor database

(2009) Paulino Pérez-Rodríguez et al.   NUCLEIC ACIDS RESEARCH

Identification and expression profiling analysis of TIFY family genes involved in stress and phytohormone responses in rice

(2009) Haiyan Ye et al.   PLANT MOLECULAR BIOLOGY

Heat shock factor gene family in rice: Genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses

(2009) Dheeraj Mittal et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Rice germination and seedling growth in the absence of oxygen

(2008) Leonardo Magneschi et al.   ANNALS OF BOTANY

Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond

(2008) Endang M. Septiningsih et al.   ANNALS OF BOTANY

Flooding Stress: Acclimations and Genetic Diversity

(2008) J. Bailey-Serres et al.   Annual Review of Plant Biology

Expression pattern and activity of six glutelin gene promoters in transgenic rice

(2008) L. Q. Qu et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Comprehensive Transcriptional Profiling of the WRKY Gene Family in Rice Under Various Abiotic and Phytohormone Treatments

(2008) Rengasamy Ramamoorthy et al.   PLANT AND CELL PHYSIOLOGY

Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice

(2008) T. Fukao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA