4.5 Article

Ubiquitous giants: a plethora of giant viruses found in Brazil and Antarctica

期刊

VIROLOGY JOURNAL
卷 15, 期 -, 页码 -

出版社

BMC
DOI: 10.1186/s12985-018-0930-x

关键词

Giant viruses; Prospection; Brazil; Antarctica; Pandoravirus; Cedratvirus; Marseillevirus; Mimivirus

类别

资金

  1. CNPq
  2. CAPES
  3. FAPMEIG
  4. Brazilian National Science and Technology Institute on Antarctic Environmental Research (INCT-APA) [CNPq 574018/2008]
  5. Brazilian Antarctic Program, PROANTAR, as part of the IPY [403, 520194/2006-3]

向作者/读者索取更多资源

Background: Since the discovery of giant viruses infecting amoebae in 2003, many dogmas of virology have been revised and the search for these viruses has been intensified. Over the last few years, several new groups of these viruses have been discovered in various types of samples and environments. In this work, we describe the isolation of 68 giant viruses of amoeba obtained from environmental samples from Brazil and Antarctica. Methods: Isolated viruses were identified by hemacolor staining, PCR assays and electron microscopy (scanning and/or transmission). Results: A total of 64 viruses belonging to the Mimiviridae family were isolated (26 from lineage A, 13 from lineage B, 2 from lineage C and 23 from unidentified lineages) from different types of samples, including marine water from Antarctica, thus being the first mimiviruses isolated in this extreme environment to date. Furthermore, a marseillevirus was isolated from sewage samples along with two pandoraviruses and a cedratvirus (the third to be isolated in the world so far). Conclusions: Considering the different type of samples, we found a higher number of viral groups in sewage samples. Our results reinforce the importance of prospective studies in different environmental samples, therefore improving our comprehension about the circulation anddiversity of these viruses in nature.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.5
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Biochemistry & Molecular Biology

Human variation in the protein receptor ACE2 affects its binding affinity to SARS-CoV-2 in a variant-dependent manner

Thiago M. Santos, Ayrton B. P. Lisboa, Wenderson Rodrigues, Helena Gomes, Jonatas Abrahao, Luiz-Eduardo Del-Bem

Summary: This study investigated the impact of ACE2 protein variations on SARS-CoV-2 Variants Of Concern (VOCs) through molecular simulations. The results showed that VOCs bind more efficiently to human ACE2, and ACE2 protein variations can weaken the interaction and protein stability with SARS-CoV-2.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2023)

Article Ecology

Structure and Dynamics of Periphyton in a Neotropical Freshwater Lake, with Emphasis on Ciliates and Their Relationships with Bacterial Taxa

Adriana Giongo, Luiz Gustavo dos Anjos Borges, Taiz L. Lopes Simao, Eduardo Eizirik, Laura R. P. Utz

Summary: In this study, the structure and dynamics of periphyton communities in freshwater systems were investigated using eDNA metabarcoding and morphology-based approaches. The results showed that biofilms played a crucial role in nutrient recycling, and peritrich ciliates were the most dominant group, exhibiting clear successional patterns at both sites. Furthermore, the turnover dynamics of the communities differed between the two sites, despite their adjacency and similar abiotic properties.

MICROBIAL ECOLOGY (2023)

Article Microbiology

Diversity of Myxobacteria Isolated from Indonesian Mangroves and Their Potential for New Antimicrobial Sources

Senlie Octaviana, Gian Primahana, Tjandrawati Mozef, Luiz G. A. Borges, Dietmar H. Pieper, Joachim Wink

Summary: The aim of this study was to evaluate the myxobacterial community composition and isolate myxobacteria in Indonesian mangroves. It was found that there were 25 cultivable myxobacteria in six genera, and 13 crude extracts showed moderate activities against human pathogenic microorganisms. This study highlights the importance of mangrove habitats as a source of myxobacteria and novel antimicrobial compounds.

CURRENT MICROBIOLOGY (2023)

Article Virology

Ultrastructural analysis of monkeypox virus replication in Vero cells

Amanda Stephanie Arantes Witt, Giliane de Souza Trindade, Fernanda Gil de Souza, Mateus Sa Magalhaes Serafim, Alana Vitor Barbosa da Costa, Marcos Vinicius Ferreira Silva, Felipe Campos de Melo Iani, Rodrigo Araujo Lima Rodrigues, Erna Geessien Kroon, Jonatas Santos Abrahao

Summary: In May 2022, the first worldwide outbreak of monkeypox virus (MPXV) was reported, showing different clinical aspects compared to previous human monkeypox infections. This study used transmission electron microscopy (TEM) to evaluate the ultrastructural features of MPXV infection in Vero cells. The results revealed various aspects of the MPXV cycle, including the entry of intracellular mature virus particles, reorganization of the endoplasmic reticulum, and distinct regions in the viral factory. The findings also showed viral crescents, different MPXV particle morphotypes, and cellular alterations induced by infection.

JOURNAL OF MEDICAL VIROLOGY (2023)

Article Virology

Association between Anti-DENV IgM Serum Prevalence and CD11b Expression by Classical Monocytes in Obesity

Karine Beatriz Costa, Bruna Caroline Chaves Garcia, Marina Luiza Baeta Costa, Yara Gomes Pena, Eduardo Augusto Barbosa Figueiredo, Marcelo Henrique Fernandes Ottoni, Juliane Duarte Santos, Vinicius de Oliveira Ottone, Danilo Bretas de Oliveira, Etel Rocha-Vieira

Summary: This study investigated the association between obesity and recent, inapparent dengue. The results showed an association between recent inapparent dengue and obesity, as well as the involvement of a specific type of monocytes in this association.

VIRUSES-BASEL (2023)

Article Medicine, General & Internal

Vaginal and neonatal microbiota in pregnant women with preterm premature rupture of membranes and consecutive early onset neonatal sepsis

Luiz Gustavo dos Anjos Borges, Jana Pastuschek, Yvonne Heimann, Kristin Dawczynski, Ekkehard Schleussner, Dietmar H. Pieper, Janine Zollkau

Summary: This study aims to evaluate the vaginal microbial composition of PPROM patients and its development under standard antibiotic therapy, as well as to assess the usefulness of vaginal microbiota for the prediction of EONS. The study also examines the neonatal microbiota at birth as a possible reflection of in utero microbiota. The findings suggest that analyzing vaginal and neonatal microbiota through 16S rRNA gene sequencing can be a basis for individualized risk assessment for consecutive EONS.

BMC MEDICINE (2023)

Article Microbiology

The 2-methylpropene degradation pathway in Mycobacteriaceae family strains

Steffen Helbich, Israel Barrantes, Luiz Gustavo dos Anjos Borges, Dietmar H. Pieper, Yevhen Vainshtein, Kai Sohn, Karl-Heinrich Engesser

Summary: Two bacterial strains, Mycolicibacterium gadium IBE100 and Mycobacterium paragordonae IBE200, were found to utilize 2-methylpropene as the sole carbon and energy source. The degradation pathway of 2-methylpropene was proposed based on whole genome sequencing, differential expression analysis, and peptide-mass fingerprinting. Key genes involved in the degradation were identified, providing information for the identification of potential degraders.

ENVIRONMENTAL MICROBIOLOGY (2023)

Article Virology

Orthopoxvirus Circulation in an Endemic Area in Brazil: Investigation of Infections in Small Mammals during an Absence of Outbreaks

Iago J. S. Domingos, Kamila L. S. Rocha, Jessica M. Graciano, Lara R. Almeida, Jeffrey B. Doty, Adriano P. Paglia, Danilo B. Oliveira, Yoshinori J. Nakazawa, Giliane de S. Trindade

Summary: A study in Brazil found the presence of viral DNA and anti-orthopoxvirus antibodies in small mammals in a VACV-endemic area, even in the absence of current outbreaks. These findings highlight the role of small mammals in the natural cycle of VACV and emphasize the need for further ecological studies to understand how this virus is maintained in nature and to prevent BV outbreaks.

VIRUSES-BASEL (2023)

Article Chemistry, Multidisciplinary

Probing the Gelation Synergies and Anti-Escherichia coli Activity of Fmoc-Phenylalanine/Graphene Oxide Hybrid Hydrogel

Efstratios D. Sitsanidis, Lara A. L. Dutra, Johanna Schirmer, Romain Chevigny, Manu Lahtinen, Andreas Johansson, Carmen C. Piras, David K. Smith, Marja Tiirola, Mika Pettersson, Maija Nissinen

Summary: In this study, the Fmoc-F/GO hybrid hydrogel was formed by combining Fmoc-F amino acid with graphene oxide (GO) flakes for the first time. GO flakes did not affect Fmoc-F self-assembly but modulated the gel's elasticity and accelerated its formation. The hybrid hydrogel exhibited significant bactericidal activity against Gram-negative Escherichia coli (E. coli), but intermittent bacterial recovery due to the inoculum effect was observed.

ACS OMEGA (2023)

Article Geography

River channel avulsion in the Taquari River megafan of the Brazilian Pantanal: Remote sensing and modeling reveal recent and future changes

Romullo Oliveira Louzada, Fabio de Oliveira Roque, Juliana Maria Ferreira de Souza Diniz, Ivan Bergier

Summary: This study explores the evolution of the largest crevasse in the Taquari River megafan in the Pantanal, Brazil. The results suggest that the rechanneling of the river may be completed by 2080, leading to a gradual transition of aquatic areas to terrestrial state.

APPLIED GEOGRAPHY (2023)

Article Computer Science, Artificial Intelligence

CALANGO: A phylogeny-aware comparative genomics tool for discovering quantitative genotype-phenotype associations across species

Jorge Augusto Hongo, Giovanni Marques de Castro, Alison Pelri Albuquerque Menezes, Agnello Cesar Rios Picorelli, Thieres Tayroni Martins da Silva, Eddie Luidy Imada, Luigi Marchionni, Luiz-Eduardo Del-Bem, Anderson Vieira Chaves, Gabriel Magno de Freitas Almeida, Felipe Campelo, Francisco Pereira Lobo

Summary: This article introduces a phylogeny-aware comparative genomics tool called CALANGO, which is used to find homologous regions and biological roles associated with quantitative phenotypes across species. Through two case studies, CALANGO has identified both known and previously unidentified genotype-phenotype associations, providing new directions for research in ecology and agriculture.

PATTERNS (2023)

Article Geosciences, Multidisciplinary

Combining optical and microwave remote sensing for assessing gullies in human-disturbed vegetated landscapes

Romullo O. Louzada, Leticia K. Reis, Juliana M. F. de S. Diniz, Fabio de O. Roque, Fabio F. Gama, Ivan Bergier

Summary: The accurate assessment of gully is crucial for preventing soil loss, especially in agricultural landscapes. This study combines freely distributed remote sensing data to evaluate gullies in a tropical watershed with a history of cattle production. With the use of various variables from SAR and optical datasets, a Random Forest classifier was employed, achieving an overall accuracy of 89%. The method proved effective, low cost, and replicable, particularly in river basins with gullies in the tropics.

CATENA (2023)

Article Biochemistry & Molecular Biology

Molecular Architecture of Salmonella Typhimurium Virus P22 Genome Ejection Machinery

Stephano M. Iglesias, Ravi K. Lokareddy, Ruoyu Yang, Fenglin Li, Daniel P. Yeggoni, Chun-Feng David Hou, Makayla N. Leroux, Juliana R. Cortines, Justin C. Leavitt, Mary Bird, Sherwood R. Casjens, Simon White, Carolyn M. Teschke, Gino Cingolani

Summary: This study describes the complete architecture and organization of the P22 bacteriophage tail apparatus and ejection proteins using cryo-EM, genetic knockouts, and biochemical analysis. The findings provide insights into the assembly mechanism and signal transduction pathway of P22.

JOURNAL OF MOLECULAR BIOLOGY (2023)

Review Medicine, Research & Experimental

Surface fibrils on the particles of nucleocytoviruses: A review

Isabella Luiza Martins de Aquino, Matheus Gomes Barcelos, Talita Bastos Machado, Mateus Sa Magalhaes Serafim, Jonatas Santos Abrahao

Summary: The capsid plays a central role in the life cycle of viruses, protecting the viral genome and facilitating host cell interaction and infection. Giant viruses that infect protists have attracted attention for their bacterial-like dimensions and unique features, such as surface fibrils. This mini review compiles important information on the surface fibrils of nucleocytoviruses, including their functions, composition, length, organization, and origins.

EXPERIMENTAL BIOLOGY AND MEDICINE (2023)

Article Infectious Diseases

Puumala orthohantavirus circulation in its wild reservoir, the bank vole, during the 2021 outbreak of hemorrhagic fever with renal syndrome in Jura, France

Guillaume Castel, Hussein Alburkat, Caroline Tatard, Lara Dutra, Mathilde Criado, Marie Bouilloud, Tarja Sironen, Julien Pradel, Nathalie Charbonnel

Summary: This study investigated the circulation of PUUV in its animal reservoir during a large outbreak of NE in the southern Jura Mountains in France. The results showed a higher abundance of bank voles in 2021 compared to previous years and a high seroprevalence of PUUV in the captured animals during the human NE epidemic. Genetic analysis revealed clustering of PUUV strains without significant genetic variation.

INFECTIOUS DISEASES NOW (2023)

暂无数据