Exploitation of data from breeding programs supports rapid implementation of genomic selection for key agronomic traits in perennial ryegrass

Reference transcriptome assembly and annotation for perennial ryegrass

(2017) Hiroshi Shinozuka et al.   GENOME

Genotyping-by-sequencing through transcriptomics: implementation in a range of crop species with varying reproductive habits and ploidy levels

(2017) M. Michelle Malmberg et al.   PLANT BIOTECHNOLOGY JOURNAL

Prospects for applications of genomic tools in registration testing and seed certification of ryegrass varieties

(2016) Junping Wang et al.   PLANT BREEDING

Targeted genotyping-by-sequencing permits cost-effective identification and discrimination of pasture grass species and cultivars

(2016) Luke W. Pembleton et al.   THEORETICAL AND APPLIED GENETICS

Genetic Gain and Inbreeding from Genomic Selection in a Simulated Commercial Breeding Program for Perennial Ryegrass

(2016) Zibei Lin et al.   Plant Genome

Accuracy of Genomic Prediction in a Commercial Perennial Ryegrass Breeding Program

(2016) Dario Fè et al.   Plant Genome

Implementation of Genomic Prediction in Lolium perenne (L.) Breeding Populations

(2016) Nastasiya F. Grinberg et al.   Frontiers in Plant Science

Evidence for Heterosis in Italian Ryegrass (Lolium multiflorum Lam.) Based on Inbreeding Depression in F2 Generation Offspring from Biparental Crosses

(2016) Junping Wang et al.   Agronomy-Basel

Genomic dissection and prediction of heading date in perennial ryegrass

(2015) Dario Fè et al.   BMC GENOMICS

Accuracy of genomic selection for alfalfa biomass yield in different reference populations

(2015) Paolo Annicchiarico et al.   BMC GENOMICS

A synteny-based draft genome sequence of the forage grassLolium perenne

(2015) Stephen L. Byrne et al.   PLANT JOURNAL

LinkImpute: Fast and Accurate Genotype Imputation for Nonmodel Organisms

(2015) Daniel Money et al.   G3-Genes Genomes Genetics

Genomic Prediction in Pea: Effect of Marker Density and Training Population Size and Composition on Prediction Accuracy

(2015) Nadim Tayeh et al.   Frontiers in Plant Science

Accuracy and responses of genomic selection on key traits in apple breeding

(2015) Hélène Muranty et al.   Horticulture Research

Genome Wide Analysis of Flowering Time Trait in Multiple Environments via High-Throughput Genotyping Technique in Brassica napus L.

(2015) Lun Li et al.   PLoS One

Genome-Wide Regression and Prediction with the BGLR Statistical Package

(2014) P. Perez et al.   GENETICS

De Novo Assembly of the Perennial Ryegrass Transcriptome Using an RNA-Seq Strategy

(2014) Jacqueline D. Farrell et al.   PLoS One

Prospects for genomic selection in forage plant species

(2013) Benjamin J. Hayes et al.   PLANT BREEDING

Complementary forages ? integration at a whole-farm level

(2013) R. P. Rawnsley et al.   Animal Production Science

Quantitative Trait Locus (QTL) meta-analysis and comparative genomics for candidate gene prediction in perennial ryegrass (Lolium perenne L.)

(2012) Hiroshi Shinozuka et al.   BMC GENETICS

Breeding perennial grasses for forage usage: An experimental assessment of trait changes in diploid perennial ryegrass (Lolium perenne L.) cultivars released in the last four decades

(2011) Jean-Paul Sampoux et al.   FIELD CROPS RESEARCH

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Interannual variation in pasture growth rate in Australian and New Zealand dairy regions and its consequences for system management

(2009) D. F. Chapman et al.   Animal Production Science