The prehistoric peopling of Southeast Asia

Population Turnover in Remote Oceania Shortly after Initial Settlement

(2018) Mark Lipson et al.   CURRENT BIOLOGY

Additional evidence for early modern human morphological diversity in Southeast Asia at Tam Pa Ling, Laos

(2018) Laura Shackelford et al.   QUATERNARY INTERNATIONAL

New protocol for compound-specific radiocarbon analysis of archaeological bones

(2018) Thibaut Deviese et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Language continuity despite population replacement in Remote Oceania

(2018) Cosimo Posth et al.   Nature Ecology & Evolution

Discerning the Origins of the Negritos, First Sundaland People: Deep Divergence and Archaic Admixture

(2017) Timothy A. Jinam et al.   Genome Biology and Evolution

Complex Patterns of Admixture across the Indonesian Archipelago

(2017) Georgi Hudjashov et al.   MOLECULAR BIOLOGY AND EVOLUTION

A working model of the deep relationships of diverse modern human genetic lineages outside of Africa

(2017) Mark Lipson et al.   MOLECULAR BIOLOGY AND EVOLUTION

An early modern human presence in Sumatra 73,000–63,000 years ago

(2017) K. E. Westaway et al.   NATURE

Direct dating of Neanderthal remains from the site of Vindija Cave and implications for the Middle to Upper Paleolithic transition

(2017) Thibaut Devièse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers

(2017) Martin Sikora et al.   SCIENCE

Comparing Ancient DNA Preservation in Petrous Bone and Tooth Cementum

(2017) Henrik B. Hansen et al.   PLoS One

pong: fast analysis and visualization of latent clusters in population genetic data

(2016) Aaron A. Behr et al.   BIOINFORMATICS

Experimental conditions improving in-solution target enrichment for ancient DNA

(2016) Diana I. Cruz-Dávalos et al.   Molecular Ecology Resources

Genomic insights into the peopling of the Southwest Pacific

(2016) Pontus Skoglund et al.   NATURE

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations

(2016) Swapan Mallick et al.   NATURE

Genomic reconstruction of the history of extant populations of India reveals five distinct ancestral components and a complex structure

(2016) Analabha Basu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The oldest Hoabinhian technocomplex in Asia (43.5 ka) at Xiaodong rockshelter, Yunnan Province, southwest China

(2016) Xueping Ji et al.   QUATERNARY INTERNATIONAL

Rice Domestication Revealed by Reduced Shattering of Archaeological rice from the Lower Yangtze valley

(2016) Yunfei Zheng et al.   Scientific Reports

A prehistoric flexed human burial from Pha Phen, Middle Mekong Valley, Laos: its context in Southeast Asia

(2015) N. TAYLES et al.   ANTHROPOLOGICAL SCIENCE

Evolutionary Genomics and Conservation of the Endangered Przewalski’s Horse

(2015) Clio Der Sarkissian et al.   CURRENT BIOLOGY

Deep History of East Asian Populations Revealed Through Genetic Analysis of the Ainu

(2015) C. Jeong et al.   GENETICS

Unravelling the Genetic History of Negritos and Indigenous Populations of Southeast Asia

(2015) Farhang Aghakhanian et al.   Genome Biology and Evolution

Population genomics of Bronze Age Eurasia

(2015) Morten E. Allentoft et al.   NATURE

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

Early Lapita skeletons from Vanuatu show Polynesian craniofacial shape: Implications for Remote Oceanic settlement and Lapita origins

(2015) Frédérique Valentin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic evidence for the Pleistocene and recent population history of Native Americans

(2015) M. Raghavan et al.   SCIENCE

Investigation of Human Cancers for Retrovirus by Low-Stringency Target Enrichment and High-Throughput Sequencing

(2015) Lasse Vinner et al.   Scientific Reports

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Ancient Whole Genome Enrichment Using Baits Built from Modern DNA

(2014) Jacob M. Enk et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancient human genomes suggest three ancestral populations for present-day Europeans

(2014) Iosif Lazaridis et al.   NATURE

Genome sequence of a 45,000-year-old modern human from western Siberia

(2014) Qiaomei Fu et al.   NATURE

Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX

(2014) Mikkel Schubert et al.   Nature Protocols

Fast Principal Component Analysis of Large-Scale Genome-Wide Data

(2014) Gad Abraham et al.   PLoS One

Genomic structure in Europeans dating back at least 36,200 years

(2014) A. Seguin-Orlando et al.   SCIENCE

Reconstructing Austronesian population history in Island Southeast Asia

(2014) Mark Lipson et al.   Nature Communications

Pulling out the 1%: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries

(2013) Meredith L. Carpenter et al.   AMERICAN JOURNAL OF HUMAN GENETICS

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

A Revised Timescale for Human Evolution Based on Ancient Mitochondrial Genomes

(2013) Qiaomei Fu et al.   CURRENT BIOLOGY

Estimating Individual Admixture Proportions from Next Generation Sequencing Data

(2013) Line Skotte et al.   GENETICS

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

(2013) Maanasa Raghavan et al.   NATURE

The complete genome sequence of a Neanderthal from the Altai Mountains

(2013) Kay Prüfer et al.   NATURE

Predicting the molecular complexity of sequencing libraries

(2013) Timothy Daley et al.   NATURE METHODS

Length and GC-biases during sequencing library amplification: A comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries

(2012) Jesse Dabney et al.   BIOTECHNIQUES

Improving ancient DNA read mapping against modern reference genomes

(2012) Mikkel Schubert et al.   BMC GENOMICS

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

Reconstructing Native American population history

(2012) David Reich et al.   NATURE

Origins and Genetic Legacy of Neolithic Farmers and Hunter-Gatherers in Europe

(2012) P. Skoglund et al.   SCIENCE

A High-Coverage Genome Sequence from an Archaic Denisovan Individual

(2012) M. Meyer et al.   SCIENCE

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

Denisova Admixture and the First Modern Human Dispersals into Southeast Asia and Oceania

(2011) David Reich et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Rice fields and modes of rice cultivation between 5000 and 2500 BC in east China

(2009) Zheng Yunfei et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA

(2009) Adrian W. Briggs et al.   NUCLEIC ACIDS RESEARCH

Mapping Human Genetic Diversity in Asia

(2009) et al.   SCIENCE

The Domestication Process and Domestication Rate in Rice: Spikelet Bases from the Lower Yangtze

(2009) D. Q Fuller et al.   SCIENCE

Enredo and Pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs

(2008) B. Paten et al.   GENOME RESEARCH

Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation

(2008) J. Z. Li et al.   SCIENCE