Proteogenomic Analysis to Identify Missing Proteins from Haploid Cell Lines

Accelerating the search for the missing proteins in the human proteome

(2017) Mark S. Baker et al.   Nature Communications

Deep Coverage Proteomics Identifies More Low-Abundance Missing Proteins in Human Testis Tissue with Q-Exactive HF Mass Spectrometer

(2016) Wei Wei et al.   JOURNAL OF PROTEOME RESEARCH

The MaxQuant computational platform for mass spectrometry-based shotgun proteomics

(2016) Stefka Tyanova et al.   Nature Protocols

Proteomic Profiling for Identification of Novel Biomarkers Differentially Expressed in Human Ovaries from Polycystic Ovary Syndrome Patients

(2016) Li Li et al.   PLoS One

A multi-omic analysis of human naïve CD4+ T cells

(2015) Christopher J. Mitchell et al.   BMC Systems Biology

Proteogenomics from a bioinformatics angle: A growing field

(2015) Gerben Menschaert et al.   MASS SPECTROMETRY REVIEWS

Megabase-scale deletion using CRISPR/Cas9 to generate a fully haploid human cell line

(2014) Patrick Essletzbichler et al.   GENOME RESEARCH

A draft map of the human proteome

(2014) Min-Sik Kim et al.   NATURE

Reconstructing targetable pathways in lung cancer by integrating diverse omics data

(2013) O. Alejandro Balbin et al.   Nature Communications

Personal Omics Profiling Reveals Dynamic Molecular and Medical Phenotypes

(2012) Rui Chen et al.   CELL

Combining Filter-Aided Sample Preparation and Pseudoshotgun Technology To Profile the Proteome of a Low Number of Early Passage Human Melanoma Cells

(2012) Margarita Maurer et al.   JOURNAL OF PROTEOME RESEARCH

The State of the Human Proteome in 2012 as Viewed through PeptideAtlas

(2012) Terry Farrah et al.   JOURNAL OF PROTEOME RESEARCH

neXtProt: Organizing Protein Knowledge in the Context of Human Proteome Projects

(2012) Pascale Gaudet et al.   JOURNAL OF PROTEOME RESEARCH

The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome

(2012) Young-Ki Paik et al.   NATURE BIOTECHNOLOGY

neXtProt: a knowledge platform for human proteins

(2011) L. Lane et al.   NUCLEIC ACIDS RESEARCH

Proteomics, Human Proteome Project, and Chromosomes

(2010) William Hancock et al.   JOURNAL OF PROTEOME RESEARCH

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

Haploid Genetic Screens in Human Cells Identify Host Factors Used by Pathogens

(2009) J. E. Carette et al.   SCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY