Evolution of genomic variation in the burrowing owl in response to recent colonization of urban areas

Inferring Individual Inbreeding and Demographic History from Segments of Identity by Descent in Ficedula Flycatcher Genome Sequences

(2017) Marty Kardos et al.   GENETICS

Urban landscape genomics identifies fine-scale gene flow patterns in an avian invasive

(2017) GW Low et al.   HEREDITY

Signatures of positive selection and local adaptation to urbanization in white-footed mice (Peromyscus leucopus )

(2017) Stephen E. Harris et al.   MOLECULAR ECOLOGY

Global urban signatures of phenotypic change in animal and plant populations

(2017) Marina Alberti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of life in urban environments

(2017) Marc T. J. Johnson et al.   SCIENCE

Microscale nest-site selection by the Burrowing Owl (Athene cunicularia) in the pampas of Argentina

(2017) Guadalupe Martínez et al.   Wilson Journal of Ornithology

Inferring Individual Inbreeding and Demographic History from Segments of Identity by Descent in Ficedula Flycatcher Genome Sequences

(2017) Marty Kardos et al.   GENETICS

Urban conservation hotspots: predation release allows the grassland-specialist burrowing owl to perform better in the city

(2017) Natalia Rebolo-Ifrán et al.   Scientific Reports

Population genomics of the Anthropocene: urbanization is negatively associated with genome-wide variation in white-footed mouse populations

(2016) Jason Munshi-South et al.   Evolutionary Applications

Direct estimate of the rate of germline mutation in a bird

(2016) Linnéa Smeds et al.   GENOME RESEARCH

A decadal review of urban ornithology and a prospectus for the future

(2016) John M. Marzluff   IBIS

Inferring Population Size History from Large Samples of Genome-Wide Molecular Data - An Approximate Bayesian Computation Approach

(2016) Simon Boitard et al.   PLoS Genetics

Heritability of fear of humans in urban and rural populations of a bird species

(2016) Martina Carrete et al.   Scientific Reports

scrm: efficiently simulating long sequences using the approximated coalescent with recombination

(2015) Paul R. Staab et al.   BIOINFORMATICS

Variation at the DRD4 locus is associated with wariness and local site selection in urban black swans

(2015) Wouter F.D. van Dongen et al.   BMC EVOLUTIONARY BIOLOGY

Shared genetic diversity across the global invasive range of the monk parakeet suggests a common restricted geographic origin and the possibility of convergent selection

(2015) Pim Edelaar et al.   MOLECULAR ECOLOGY

Methods and models for unravelling human evolutionary history

(2015) Joshua G. Schraiber et al.   NATURE REVIEWS GENETICS

Links between fear of humans, stress and survival support a non-random distribution of birds among urban and rural habitats

(2015) Natalia Rebolo-Ifrán et al.   Scientific Reports

Urbanisation tolerance and the loss of avian diversity

(2014) Daniel Sol et al.   ECOLOGY LETTERS

Inferring human population size and separation history from multiple genome sequences

(2014) Stephan Schiffels et al.   NATURE GENETICS

High Urban Breeding Densities Do Not Disrupt Genetic Monogamy in a Bird Species

(2014) Sol Rodriguez-Martínez et al.   PLoS One

Allelic Richness following Population Founding Events – A Stochastic Modeling Framework Incorporating Gene Flow and Genetic Drift

(2014) Gili Greenbaum et al.   PLoS One

The Evolutionary Genomics of Birds

(2013) Hans Ellegren   Annual Review of Ecology Evolution and Systematics

Candidate gene polymorphisms for behavioural adaptations during urbanization in blackbirds

(2013) J. C. Mueller et al.   MOLECULAR ECOLOGY

Boldness behavior and stress physiology in a novel urban environment suggest rapid correlated evolutionary adaptation

(2012) Jonathan W. Atwell et al.   BEHAVIORAL ECOLOGY

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Effects of urbanization on Song Sparrow (Melospiza melodia) population connectivity

(2012) Thomas M. Unfried et al.   CONSERVATION GENETICS

Genetic diversity and population structure in contemporary house sparrow populations along an urbanization gradient

(2012) C Vangestel et al.   HEREDITY

Algorithms for geodesics

(2012) Charles F. F. Karney   JOURNAL OF GEODESY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Benchmarking spliced alignment programs including Spaln2, an extended version of Spaln that incorporates additional species-specific features

(2012) Hiroaki Iwata et al.   NUCLEIC ACIDS RESEARCH

abc: an R package for approximate Bayesian computation (ABC)

(2012) Katalin Csilléry et al.   Methods in Ecology and Evolution

Inference of Population Structure using Dense Haplotype Data

(2012) Daniel John Lawson et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Spatial heterogeneity in genetic relatedness among house sparrows along an urban-rural gradient as revealed by individual-based analysis

(2011) CARL VANGESTEL et al.   MOLECULAR ECOLOGY

Colonisation of urban environments is associated with reduced migratory behaviour, facilitating divergence from ancestral populations

(2011) Karl L. Evans et al.   OIKOS

Inter-Individual Variability in Fear of Humans and Relative Brain Size of the Species Are Related to Contemporary Urban Invasion in Birds

(2011) Martina Carrete et al.   PLoS One

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

A Rapid, Strong, and Convergent Genetic Response to Urban Habitat Fragmentation in Four Divergent and Widespread Vertebrates

(2010) Kathleen Semple Delaney et al.   PLoS One

Molecular evolution of genes in avian genomes

(2010) Kiwoong Nam et al.   GENOME BIOLOGY

Independent colonization of multiple urban centres by a formerly forest specialist bird species

(2009) K. L. Evans et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION