OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes
出版年份 2018 全文链接
标题
OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes
作者
关键词
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出版物
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 115, Issue 10, Pages E2183-E2192
出版商
Proceedings of the National Academy of Sciences
发表日期
2018-02-21
DOI
10.1073/pnas.1714530115
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Polycomb Repressive Complex 1 Generates Discrete Compacted Domains that Change during Differentiation
- (2017) Sharmistha Kundu et al. MOLECULAR CELL
- Profiling the transcriptome with RNA SPOTs
- (2017) Chee-Huat Linus Eng et al. NATURE METHODS
- Super-resolution imaging reveals distinct chromatin folding for different epigenetic states
- (2016) Alistair N. Boettiger et al. NATURE
- Optical imaging of individual biomolecules in densely packed clusters
- (2016) Mingjie Dai et al. Nature Nanotechnology
- In Situ Transcription Profiling of Single Cells Reveals Spatial Organization of Cells in the Mouse Hippocampus
- (2016) Sheel Shah et al. NEURON
- High-throughput single-cell gene-expression profiling with multiplexed error-robust fluorescence in situ hybridization
- (2016) Jeffrey R. Moffitt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Spatial organization of chromatin domains and compartments in single chromosomes
- (2016) Siyuan Wang et al. SCIENCE
- Combined in vitro transcription and reverse transcription to amplify and label complex synthetic oligonucleotide probe libraries
- (2015) Yusuf Murgha et al. BIOTECHNIQUES
- A new approach for annotation of transposable elements using small RNA mapping
- (2015) Moaine El Baidouri et al. NUCLEIC ACIDS RESEARCH
- Spatially resolved, highly multiplexed RNA profiling in single cells
- (2015) K. H. Chen et al. SCIENCE
- Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes
- (2015) Brian J. Beliveau et al. Nature Communications
- Super-resolution Microscopy Approaches for Live Cell Imaging
- (2014) Antoine G. Godin et al. BIOPHYSICAL JOURNAL
- Human molecular cytogenetics: from cells to nucleotides
- (2014) Mariluce Riegel GENETICS AND MOLECULAR BIOLOGY
- A simple method to estimate the average localization precision of a single-molecule localization microscopy experiment
- (2014) Ulrike Endesfelder et al. HISTOCHEMISTRY AND CELL BIOLOGY
- Large-scale de novo DNA synthesis: technologies and applications
- (2014) Sriram Kosuri et al. NATURE METHODS
- A versatile genome-scale PCR-based pipeline for high-definition DNA FISH
- (2012) Magda Bienko et al. NATURE METHODS
- Fiji: an open-source platform for biological-image analysis
- (2012) Johannes Schindelin et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Comprehensive FISH Probe Design Tool Applied to Imaging Human Immunoglobulin Class Switch Recombination
- (2012) Jakub Nedbal et al. PLoS One
- Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes
- (2012) B. J. Beliveau et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
- (2011) Guillaume Marçais et al. BIOINFORMATICS
- Fluorescence in situ hybridization with high-complexity repeat-free oligonucleotide probes generated by massively parallel synthesis
- (2011) Shelagh Boyle et al. CHROMOSOME RESEARCH
- Visualization of Fine-Scale Genomic Structure by Oligonucleotide-Based High-Resolution FISH
- (2011) N.A. Yamada et al. CYTOGENETIC AND GENOME RESEARCH
- mathFISH, a Web Tool That Uses Thermodynamics-Based Mathematical Models forIn SilicoEvaluation of Oligonucleotide Probes for FluorescenceIn SituHybridization
- (2010) L. Safak Yilmaz et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Single-Molecule Kinetics and Super-Resolution Microscopy by Fluorescence Imaging of Transient Binding on DNA Origami
- (2010) Ralf Jungmann et al. NANO LETTERS
- Fast, single-molecule localization that achieves theoretically minimum uncertainty
- (2010) Carlas S Smith et al. NATURE METHODS
- Minimizing off-target signals in RNA fluorescent in situ hybridization
- (2010) Aaron Arvey et al. NUCLEIC ACIDS RESEARCH
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Biopython: freely available Python tools for computational molecular biology and bioinformatics
- (2009) P. J. A. Cock et al. BIOINFORMATICS
- The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
- (2009) Peter J. A. Cock et al. NUCLEIC ACIDS RESEARCH
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Highly inclined thin illumination enables clear single-molecule imaging in cells
- (2008) Makio Tokunaga et al. NATURE METHODS
- Imaging individual mRNA molecules using multiple singly labeled probes
- (2008) Arjun Raj et al. NATURE METHODS
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