Comparative transcriptome analysis reveals key genes potentially related to soluble sugar and organic acid accumulation in watermelon

Comparative Transcriptome Analyses of Resistant and Susceptible Near-Isogenic Wheat Lines following Inoculation with Blumeria graminis f. sp. tritici

(2017) Piyi Xing et al.   International Journal of Genomics

Candidate gene prediction and expression profiling of near isogenic lines (NILs) carrying stay-green QTLs in rabi sorghum

(2016) Gaurav N. Chaudhari et al.   JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY

Spatial accumulation pattern of citrulline and other nutrients in immature and mature watermelon fruits

(2016) Kinya Akashi et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Construction of a genetic linkage map of watermelon (Citrullus lanatus) using CAPS and SSR markers and QTL analysis for fruit quality traits

(2016) Yao Cheng et al.   SCIENTIA HORTICULTURAE

Genetic and biochemical analysis reveals linked QTLs determining natural variation for fruit post-harvest water loss in pepper (Capsicum)

(2016) Sigal Popovsky-Sarid et al.   THEORETICAL AND APPLIED GENETICS

Comparative Temporal Transcriptome Profiling of Wheat near Isogenic Line Carrying Lr57 under Compatible and Incompatible Interactions

(2016) Inderjit S. Yadav et al.   Frontiers in Plant Science

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Comparative Transcriptome Analysis of Cultivated and Wild Watermelon during Fruit Development

(2015) Shaogui Guo et al.   PLoS One

An integrative analysis of the transcriptome and proteome of the pulp of a spontaneous late-ripening sweet orange mutant and its wild type improves our understanding of fruit ripening in citrus

(2014) Juxun Wu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of Suitable Reference Genes for Gene Expression Normalization in qRT-PCR Analysis in Watermelon

(2014) Qiusheng Kong et al.   PLoS One

Dynamic characteristics of sugar accumulation and related enzyme activities in sweet and non-sweet watermelon fruits

(2013) Jingan Liu et al.   ACTA PHYSIOLOGIAE PLANTARUM

Transcriptomic analysis of differentially expressed genes during anther development in genetic male sterile and wild type cotton by digital gene-expression profiling

(2013) Mingming Wei et al.   BMC GENOMICS

Comparative genomics reveals candidate carotenoid pathway regulators of ripening watermelon fruit

(2013) Stefania Grassi et al.   BMC GENOMICS

Sucrose functions as a signal involved in the regulation of strawberry fruit development and ripening

(2013) Haifeng Jia et al.   NEW PHYTOLOGIST

A natural mutation-led truncation in one of the two aluminum-activated malate transporter-like genes at the Ma locus is associated with low fruit acidity in apple

(2012) Yang Bai et al.   MOLECULAR GENETICS AND GENOMICS

The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions

(2012) Shaogui Guo et al.   NATURE GENETICS

Expression Patterns of Genes Involved in Sugar Metabolism and Accumulation during Apple Fruit Development

(2012) Mingjun Li et al.   PLoS One

Comparative mapping in watermelon [Citrullus lanatus (Thunb.) Matsum. et Nakai]

(2012) Katherine Sandlin et al.   THEORETICAL AND APPLIED GENETICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles

(2011) Shaogui Guo et al.   BMC GENOMICS

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Developmental changes of carbohydrates, organic acids, amino acids, and phenolic compounds in ‘Honeycrisp’ apple flesh

(2010) Yanzi Zhang et al.   FOOD CHEMISTRY

Isolation and characterization of an apple cytosolic malate dehydrogenase gene reveal its function in malate synthesis

(2010) Yu-Xin Yao et al.   JOURNAL OF PLANT PHYSIOLOGY

Not just a circle: flux modes in the plant TCA cycle

(2010) Lee J. Sweetlove et al.   TRENDS IN PLANT SCIENCE

Carbon metabolism of peach fruit after harvest: changes in enzymes involved in organic acid and sugar level modifications

(2009) J. Borsani et al.   JOURNAL OF EXPERIMENTAL BOTANY

Sucrose accumulation in watermelon fruits: Genetic variation and biochemical analysis

(2009) Merav Yativ et al.   JOURNAL OF PLANT PHYSIOLOGY

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

(2009) Peter J. A. Cock et al.   NUCLEIC ACIDS RESEARCH

Regulation of malate metabolism in grape berry and other developing fruits

(2009) Crystal Sweetman et al.   PHYTOCHEMISTRY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Gene expression in developing watermelon fruit

(2008) W Patrick Wechter et al.   BMC GENOMICS