Know your enemy, embrace your friend: using omics to understand how plants respond differently to pathogenic and mutualistic microorganisms

Role of plant–fungal nutrient trading and host control in determining the competitive success of ectomycorrhizal fungi

(2017) Sara Hortal et al.   ISME Journal

Ethylene Signaling Is Important for Isoflavonoid-Mediated Resistance to Rhizoctonia solani in Roots of Medicago truncatula

(2017) Yao Liu et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Type IV Effector Proteins Involved in the Medicago-Sinorhizobium Symbiosis

(2017) Matthew S. Nelson et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The rice LysM receptor-like kinase Os CERK1 is required for the perception of short-chain chitin oligomers in arbuscular mycorrhizal signaling

(2017) Gennaro Carotenuto et al.   NEW PHYTOLOGIST

Plant Signaling and Metabolic Pathways Enabling Arbuscular Mycorrhizal Symbiosis

(2017) Allyson M. MacLean et al.   PLANT CELL

RXLR Effector AVR2 Up-Regulates a Brassinosteroid-Responsive bHLH Transcription Factor to Suppress Immunity

(2017) Dionne Turnbull et al.   PLANT PHYSIOLOGY

Receptor-mediated chitin perception in legume roots is functionally separable from Nod factor perception

(2017) Zoltan Bozsoki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Botrytis small RNA Bc-siR37 suppresses plant defense genes by cross-kingdom RNAi

(2017) Ming Wang et al.   RNA Biology

Ancestral alliances: Plant mutualistic symbioses with fungi and bacteria

(2017) Francis M. Martin et al.   SCIENCE

TAL effector driven induction of a SWEET gene confers susceptibility to bacterial blight of cotton

(2017) Kevin L. Cox et al.   Nature Communications

Molecular basis of lipo-chitooligosaccharide recognition by the lysin motif receptor-like kinase LYR3 in legumes

(2016) N. Malkov et al.   BIOCHEMICAL JOURNAL

Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum

(2016) Riccardo Baroncelli et al.   BMC GENOMICS

LYR3, a high-affinity LCO-binding protein ofMedicago truncatula, interacts with LYK3, a key symbiotic receptor

(2016) Judith Fliegmann et al.   FEBS LETTERS

The type 3 effector NopL ofSinorhizobiumsp. strain NGR234 is a mitogen-activated protein kinase substrate

(2016) Ying-Ying Ge et al.   JOURNAL OF EXPERIMENTAL BOTANY

Maize susceptibility to Ustilago maydis is influenced by genetic and chemical perturbation of carbohydrate allocation

(2016) Matthias Kretschmer et al.   MOLECULAR PLANT PATHOLOGY

Genome-wide transcriptomic analyses provide insights into the lifestyle transition and effector repertoire ofLeptosphaeria maculansduring the colonization ofBrassica napusseedlings

(2016) Parham Haddadi et al.   MOLECULAR PLANT PATHOLOGY

Strigolactone-Induced Putative Secreted Protein 1 Is Required for the Establishment of Symbiosis by the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis

(2016) Syusaku Tsuzuki et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data

(2016) Joseph W. Spatafora et al.   MYCOLOGIA

Unearthing the roots of ectomycorrhizal symbioses

(2016) Francis Martin et al.   NATURE REVIEWS MICROBIOLOGY

ImprovedPhytophthoraresistance in commercial chickpea (Cicer arietinum) varieties negatively impacts symbiotic gene signalling and symbiotic potential in some varieties

(2016) Jonathan M. Plett et al.   PLANT CELL AND ENVIRONMENT

Wheat PR-1 proteins are targeted by necrotrophic pathogen effector proteins

(2016) Susan Breen et al.   PLANT JOURNAL

Pseudomonas syringaetype III effector HopAF1 suppresses plant immunity by targeting methionine recycling to block ethylene induction

(2016) Erica J. Washington et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of sugar transporter activity for antibacterial defense in Arabidopsis

(2016) Kohji Yamada et al.   SCIENCE

Erratum: Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi

(2016) Stéphane Hacquard et al.   Nature Communications

Arbuscular mycorrhiza Symbiosis Induces a Major Transcriptional Reprogramming of the Potato SWEET Sugar Transporter Family

(2016) Jasmin Manck-Götzenberger et al.   Frontiers in Plant Science

Regulation of Plant Growth, Photosynthesis, Antioxidation and Osmosis by an Arbuscular Mycorrhizal Fungus in Watermelon Seedlings under Well-Watered and Drought Conditions

(2016) Yanling Mo et al.   Frontiers in Plant Science

Using Ancient Traits to Convert Soil Health into Crop Yield: Impact of Selection on Maize Root and Rhizosphere Function

(2016) Jennifer E. Schmidt et al.   Frontiers in Plant Science

Sesquiterpene emissions from Alternaria alternata and Fusarium oxysporum: Effects of age, nutrient availability and co-cultivation

(2016) Fabian Weikl et al.   Scientific Reports

Mechanisms of resistance/tolerance of Pyrus communis to Stemphylium vesicarium. A transcriptome analysis

(2015) Vanessa Tolentino Pereira et al.   AGROFORESTRY SYSTEMS

Fungal Effectors and Plant Susceptibility

(2015) Libera Lo Presti et al.   Annual Review of Plant Biology

Identification of Bradyrhizobium elkanii Genes Involved in Incompatibility with Soybean Plants Carrying theRj4Allele

(2015) Omar M. Faruque et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SWEETs, transporters for intracellular and intercellular sugar translocation

(2015) Joon-Seob Eom et al.   CURRENT OPINION IN PLANT BIOLOGY

Rhizobium–legume symbiosis in the absence of Nod factors: two possible scenarios with or without the T3SS

(2015) Shin Okazaki et al.   ISME Journal

The durably resistant rice cultivar Digu activates defence gene expression before the full maturation of M agnaporthe oryzae appressorium

(2015) Weitao Li et al.   MOLECULAR PLANT PATHOLOGY

The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses

(2015) Jonathan M. Plett et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

(2015) Annegret Kohler et al.   NATURE GENETICS

micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion inLotus japonicusroots and nodules

(2015) Dennis B. Holt et al.   NEW PHYTOLOGIST

Mycorrhizal ecology and evolution: the past, the present, and the future

(2015) Marcel G. A. van der Heijden et al.   NEW PHYTOLOGIST

An Arabidopsis Plasma Membrane Proton ATPase Modulates JA Signaling and Is Exploited by thePseudomonas syringaeEffector Protein AvrB for Stomatal Invasion

(2015) Zhaoyang Zhou et al.   PLANT CELL

Suppression of Arbuscule Degeneration inMedicago truncatula phosphate transporter4Mutants Is Dependent on the Ammonium Transporter 2 Family Protein AMT2;3

(2015) Florence Breuillin-Sessoms et al.   PLANT CELL

The Arabidopsis vacuolar sugar transporter SWEET2 limits carbon sequestration from roots and restrictsPythiuminfection

(2015) Hsin-Yi Chen et al.   PLANT JOURNAL

Impact of plant domestication on rhizosphere microbiome assembly and functions

(2015) Juan E. Pérez-Jaramillo et al.   PLANT MOLECULAR BIOLOGY

Plant immunity triggered by engineered in vivo release of oligogalacturonides, damage-associated molecular patterns

(2015) Manuel Benedetti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Algal ancestor of land plants was preadapted for symbiosis

(2015) Pierre-Marc Delaux et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors

(2015) Patricia Baldrich et al.   RNA Biology

Arbuscular mycorrhizal symbiosis enhanced growth and antioxidant metabolism in date palm subjected to long-term drought

(2015) Laila Benhiba et al.   TREES-STRUCTURE AND FUNCTION

Volatile signalling by sesquiterpenes from ectomycorrhizal fungi reprogrammes root architecture

(2015) Franck A. Ditengou et al.   Nature Communications

Host and non-host roots in rice: cellular and molecular approaches reveal differential responses to arbuscular mycorrhizal fungi

(2015) Valentina Fiorilli et al.   Frontiers in Plant Science

Massive sequencing of Ulmus minor’s transcriptome provides new molecular tools for a genus under the constant threat of Dutch elm disease

(2015) Pedro Perdiguero et al.   Frontiers in Plant Science

Transcriptome Analysis of Early Responsive Genes in Rice during Magnaporthe oryzae Infection

(2015) Yiming Wang et al.   Plant Pathology Journal

Transcriptome Analysis of Poplar during Leaf Spot Infection with Sphaerulina spp.

(2015) Adam J. Foster et al.   PLoS One

Structural insight into the activation of plant receptor kinases

(2014) Zhifu Han et al.   CURRENT OPINION IN PLANT BIOLOGY

Filamentous pathogen effector functions: of pathogens, hosts and microbiomes

(2014) Hanna Rovenich et al.   CURRENT OPINION IN PLANT BIOLOGY

Identification of glutathione S-transferase genes responding to pathogen infestation in Populus tomentosa

(2014) Weihua Liao et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

A dimeric PR-1-type pathogenesis-related protein interacts with ToxA and potentially mediates ToxA-induced necrosis in sensitive wheat

(2014) Shunwen Lu et al.   MOLECULAR PLANT PATHOLOGY

Streptomyces-Induced Resistance Against Oak Powdery Mildew Involves Host Plant Responses in Defense, Photosynthesis, and Secondary Metabolism Pathways

(2014) Florence Kurth et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Medicago truncatulasymbiosis mutants affected in the interaction with a biotrophic root pathogen

(2014) Thomas Rey et al.   NEW PHYTOLOGIST

Ethylene and jasmonic acid act as negative modulators during mutualistic symbiosis betweenLaccaria bicolorandPopulusroots

(2014) Jonathan M. Plett et al.   NEW PHYTOLOGIST

First evidence of mutualism between ancient plant lineages (Haplomitriopsida liverworts) and Mucoromycotina fungi and its response to simulated Palaeozoic changes in atmospheric CO2

(2014) Katie J. Field et al.   NEW PHYTOLOGIST

Role of gibberellins during arbuscular mycorrhizal formation in tomato: new insights revealed by endogenous quantification and genetic analysis of their metabolism in mycorrhizal roots

(2014) José Ángel Martín-Rodríguez et al.   PHYSIOLOGIA PLANTARUM

A novel ethylene-responsive factor fromTamarix hispida, ThERF1, is a GCC-box- and DRE-motif binding protein that negatively modulates abiotic stress tolerance inArabidopsis

(2014) Liuqiang Wang et al.   PHYSIOLOGIA PLANTARUM

A Thaumatin-Like Protein, Rj4, Controls Nodule Symbiotic Specificity in Soybean

(2014) Masaki Hayashi et al.   PLANT AND CELL PHYSIOLOGY

Soybean miR172c Targets the Repressive AP2 Transcription Factor NNC1 to ActivateENOD40Expression and Regulate Nodule Initiation

(2014) Youning Wang et al.   PLANT CELL

Roles of small RNAs in soybean defense againstPhytophthora sojaeinfection

(2014) James Wong et al.   PLANT JOURNAL

SWEET17, a Facilitative Transporter, Mediates Fructose Transport across the Tonoplast of Arabidopsis Roots and Leaves

(2014) W.-J. Guo et al.   PLANT PHYSIOLOGY

Two Cytoplasmic Effectors ofPhytophthora sojaeRegulate Plant Cell Death via Interactions with Plant Catalases

(2014) Meixiang Zhang et al.   PLANT PHYSIOLOGY

The Origin and Early Evolution of Roots

(2014) P. Kenrick et al.   PLANT PHYSIOLOGY

Oak Root Response to Ectomycorrhizal Symbiosis Establishment: RNA-Seq Derived Transcript Identification and Expression Profiling

(2014) Mónica Sebastiana et al.   PLoS One

Effector MiSSP7 of the mutualistic fungus Laccaria bicolor stabilizes the Populus JAZ6 protein and represses jasmonic acid (JA) responsive genes

(2014) J. M. Plett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nutrient computation for root architecture

(2014) T. Bisseling et al.   SCIENCE

Effectiveness of arbuscular mycorrhizal fungi in the protection of olive plants against oxidative stress induced by drought

(2014) Mohamed O. Fouad et al.   SPANISH JOURNAL OF AGRICULTURAL RESEARCH

Unconventionally secreted effectors of two filamentous pathogens target plant salicylate biosynthesis

(2014) Tingli Liu et al.   Nature Communications

The Bacterial Effector HopX1 Targets JAZ Transcriptional Repressors to Activate Jasmonate Signaling and Promote Infection in Arabidopsis

(2014) Selena Gimenez-Ibanez et al.   PLOS BIOLOGY

A secreted Ustilago maydis effector promotes virulence by targeting anthocyanin biosynthesis in maize

(2014) Shigeyuki Tanaka et al.   eLife

The potential for give and take in plant–microbiome relationships

(2014) Sarah L. Lebeis   Frontiers in Plant Science

Plant hormones in arbuscular mycorrhizal symbioses: an emerging role for gibberellins

(2013) Eloise Foo et al.   ANNALS OF BOTANY

NFP, a LysM protein controlling Nod factor perception, also intervenes inMedicago truncatularesistance to pathogens

(2013) Thomas Rey et al.   NEW PHYTOLOGIST

OakContigDF159.1, a reference library for studying differential gene expression inQuercus roburduring controlled biotic interactions: use for quantitative transcriptomic profiling of oak roots in ectomycorrhizal symbiosis

(2013) Mika T. Tarkka et al.   NEW PHYTOLOGIST

Target of tae-miR408, a chemocyanin-like protein gene (TaCLP1), plays positive roles in wheat response to high-salinity, heavy cupric stress and stripe rust

(2013) Hao Feng et al.   PLANT MOLECULAR BIOLOGY

Multiple Rice MicroRNAs Are Involved in Immunity against the Blast Fungus Magnaporthe oryzae

(2013) Y. Li et al.   PLANT PHYSIOLOGY

Signaling cross-talk in plant disease resistance

(2013) Holly Derksen et al.   PLANT SCIENCE

Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

(2013) E. Tisserant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DELLA proteins regulate arbuscule formation in arbuscular mycorrhizal symbiosis

(2013) D. S. Floss et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hijacking of leguminous nodulation signaling by the rhizobial type III secretion system

(2013) S. Okazaki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways

(2013) Arne Weiberg et al.   SCIENCE

A Downy Mildew Effector Attenuates Salicylic Acid–Triggered Immunity in Arabidopsis by Interacting with the Host Mediator Complex

(2013) Marie-Cécile Caillaud et al.   PLOS BIOLOGY

Bacterial Effector Activates Jasmonate Signaling by Directly Targeting JAZ Transcriptional Repressors

(2013) Shushu Jiang et al.   PLoS Pathogens

Chestnut resistance to the blight disease: insights from transcriptome analysis

(2012) Abdelali Barakat et al.   BMC PLANT BIOLOGY

Harnessing the rhizosphere microbiome through plant breeding and agricultural management

(2012) Matthew G. Bakker et al.   PLANT AND SOIL

Homologous RXLR effectors fromHyaloperonospora arabidopsidisandPhytophthora sojaesuppress immunity in distantly related plants

(2012) Ryan G. Anderson et al.   PLANT JOURNAL

RNA-Seq of Early-Infected Poplar Leaves by the Rust Pathogen Melampsora larici-populina Uncovers PtSultr3;5, a Fungal-Induced Host Sulfate Transporter

(2012) Benjamin Petre et al.   PLoS One

Functional Analysis of NopM, a Novel E3 Ubiquitin Ligase (NEL) Domain Effector of Rhizobium sp. Strain NGR234

(2012) Da-Wei Xin et al.   PLoS Pathogens

Global gene expression of Poncirus trifoliata, Citrus sunki and their hybrids under infection of Phytophthora parasitica

(2011) Leonardo P Boava et al.   BMC GENOMICS

A Secreted Effector Protein of Laccaria bicolor Is Required for Symbiosis Development

(2011) Jonathan M. Plett et al.   CURRENT BIOLOGY

A Secreted Fungal Effector of Glomus intraradices Promotes Symbiotic Biotrophy

(2011) Silke Kloppholz et al.   CURRENT BIOLOGY

Metabolic priming by a secreted fungal effector

(2011) Armin Djamei et al.   NATURE

Gene silencing by microRNAs: contributions of translational repression and mRNA decay

(2011) Eric Huntzinger et al.   NATURE REVIEWS GENETICS

The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont

(2011) E. Tisserant et al.   NEW PHYTOLOGIST

Phytoplasma protein effector SAP11 enhances insect vector reproduction by manipulating plant development and defense hormone biosynthesis

(2011) A. Sugio et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Arabidopsis EDS1 Connects Pathogen Effector Recognition to Cell Compartment-Specific Immune Responses

(2011) K. Heidrich et al.   SCIENCE

Pathogen Effectors Target Arabidopsis EDS1 and Alter Its Interactions with Immune Regulators

(2011) S. Bhattacharjee et al.   SCIENCE

Reciprocal Rewards Stabilize Cooperation in the Mycorrhizal Symbiosis

(2011) E. T. Kiers et al.   SCIENCE

Comparative analysis of transcript abundance in Pinus sylvestris after challenge with a saprotrophic, pathogenic or mutualistic fungus

(2011) Aleksandra Adomas et al.   TREE PHYSIOLOGY

Pseudomonas syringae Effector Protein AvrB Perturbs Arabidopsis Hormone Signaling by Activating MAP Kinase 4

(2010) Haitao Cui et al.   Cell Host & Microbe

Sugar transporters for intercellular exchange and nutrition of pathogens

(2010) Li-Qing Chen et al.   NATURE

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

(2010) Francis Martin et al.   NATURE

Fungal lipochitooligosaccharide symbiotic signals in arbuscular mycorrhiza

(2010) Fabienne Maillet et al.   NATURE

The Pseudomonas syringae effector protein HopZ1a suppresses effector-triggered immunity

(2010) Alberto P. Macho et al.   NEW PHYTOLOGIST

Host-selective toxins, Ptr ToxA and Ptr ToxB, as necrotrophic effectors in the Pyrenophora tritici-repentis-wheat interaction

(2010) Lynda M. Ciuffetti et al.   NEW PHYTOLOGIST

Fungal carbohydrate support in the ectomycorrhizal symbiosis: a review

(2010) U. Nehls et al.   PLANT BIOLOGY

Rice xa13 Recessive Resistance to Bacterial Blight Is Defeated by Induction of the Disease Susceptibility Gene Os-11N3

(2010) G. Antony et al.   PLANT CELL

An Effector-Targeted Protease Contributes to Defense against Phytophthora infestans and Is under Diversifying Selection in Natural Hosts

(2010) F. Kaschani et al.   PLANT PHYSIOLOGY

Identification of MicroRNAs Involved in Pathogen-Associated Molecular Pattern-Triggered Plant Innate Immunity

(2010) Y. Li et al.   PLANT PHYSIOLOGY

Blurred boundaries: lifestyle lessons from ectomycorrhizal fungal genomes

(2010) Jonathan M. Plett et al.   TRENDS IN GENETICS

A Renaissance of Elicitors: Perception of Microbe-Associated Molecular Patterns and Danger Signals by Pattern-Recognition Receptors

(2009) Thomas Boller et al.   Annual Review of Plant Biology

In Planta Expression Screens of Phytophthora infestans RXLR Effectors Reveal Diverse Phenotypes, Including Activation of the Solanum bulbocastanum Disease Resistance Protein Rpi-blb2

(2009) S.-K. Oh et al.   PLANT CELL

Truffles Regulate Plant Root Morphogenesis via the Production of Auxin and Ethylene

(2009) R. Splivallo et al.   PLANT PHYSIOLOGY

Biotic and Abiotic Stimulation of Root Epidermal Cells Reveals Common and Specific Responses to Arbuscular Mycorrhizal Fungi

(2009) A. Genre et al.   PLANT PHYSIOLOGY

A unique virulence factor for proliferation and dwarfism in plants identified from a phytopathogenic bacterium

(2009) A. Hoshi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pep1, a Secreted Effector Protein of Ustilago maydis, Is Required for Successful Invasion of Plant Cells

(2009) Gunther Doehlemann et al.   PLoS Pathogens

Bacterial Effectors Target the Common Signaling Partner BAK1 to Disrupt Multiple MAMP Receptor-Signaling Complexes and Impede Plant Immunity

(2008) Libo Shan et al.   Cell Host & Microbe

Plant Pattern-Recognition Receptor FLS2 Is Directed for Degradation by the Bacterial Ubiquitin Ligase AvrPtoB

(2008) Vera Göhre et al.   CURRENT BIOLOGY

Pseudomonas syringae Effector AvrPto Blocks Innate Immunity by Targeting Receptor Kinases

(2008) Tingting Xiang et al.   CURRENT BIOLOGY

The novelCladosporium fulvumlysin motif effector Ecp6 is a virulence factor with orthologues in other fungal species

(2008) Melvin D. Bolton et al.   MOLECULAR MICROBIOLOGY

ThePseudomonas syringaeType III Effector HopAM1 Enhances Virulence on Water-Stressed Plants

(2008) Ajay K. Goel et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

(2008) F. Martin et al.   NATURE

Conserved C-Terminal Motifs Required for Avirulence and Suppression of Cell Death by Phytophthora sojae effector Avr1b

(2008) D. Dou et al.   PLANT CELL

Fungal Effector Protein AVR2 Targets Diversifying Defense-Related Cys Proteases of Tomato

(2008) M. Shabab et al.   PLANT CELL

Arabidopsis proteins important for modulating defense responses to Pseudomonas syringae that secrete HopW1-1

(2008) Min Woo Lee et al.   PLANT JOURNAL